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CCAR1 cell division cycle and apoptosis regulator 1 [ Gallus gallus (chicken) ]

Gene ID: 423692, updated on 17-Aug-2024

Summary

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Symbol
CCAR1provided by CGNC
Full Name
cell division cycle and apoptosis regulator 1provided by CGNC
Primary source
CGNC:52027
See related
Ensembl:ENSGALG00010023140
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CCAR1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (11489677..11516817)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (11495825..11521780)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 16 Neighboring gene tet methylcytosine dioxygenase 1 Neighboring gene uncharacterized LOC107052121 Neighboring gene small nucleolar RNA SNORD98 Neighboring gene uncharacterized LOC112532647 Neighboring gene storkhead box 1 Neighboring gene DExD-box helicase 21 Neighboring gene nucleolar RNA helicase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell division cycle and apoptosis regulator protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    11489677..11516817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_421573.8 → XP_421573.3  cell division cycle and apoptosis regulator protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZTK7
    Related
    ENSGALP00010034154.1, ENSGALT00010056405.1
    Conserved Domains (4) summary
    smart00513
    Location:638 → 671
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:187 → 306
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1049 → 1158
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:151 → 191
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  2. XM_004942009.5 → XP_004942066.2  cell division cycle and apoptosis regulator protein 1 isoform X4

    Conserved Domains (4) summary
    smart00513
    Location:638 → 671
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:187 → 306
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1035 → 1144
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:151 → 191
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  3. XM_004942010.5 → XP_004942067.2  cell division cycle and apoptosis regulator protein 1 isoform X6

    Conserved Domains (3) summary
    PRK10927
    Location:187 → 306
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:987 → 1096
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:151 → 191
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  4. XM_004942007.5 → XP_004942064.2  cell division cycle and apoptosis regulator protein 1 isoform X2

    Conserved Domains (4) summary
    smart00513
    Location:636 → 669
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:185 → 304
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1047 → 1156
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:149 → 189
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  5. XM_040703179.2 → XP_040559113.1  cell division cycle and apoptosis regulator protein 1 isoform X7

    Conserved Domains (3) summary
    PRK10927
    Location:185 → 304
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:985 → 1094
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:149 → 189
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  6. XM_004942008.5 → XP_004942065.2  cell division cycle and apoptosis regulator protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZUM3
    Related
    ENSGALP00010034158.1, ENSGALT00010056411.1
    Conserved Domains (4) summary
    smart00513
    Location:627 → 660
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:176 → 295
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1038 → 1147
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:140 → 180
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  7. XM_040703178.2 → XP_040559112.1  cell division cycle and apoptosis regulator protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZRM0
    Related
    ENSGALP00010034163.1, ENSGALT00010056417.1
    Conserved Domains (4) summary
    smart00513
    Location:627 → 660
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:176 → 295
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1024 → 1133
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:140 → 180
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  8. XM_040703180.2 → XP_040559114.1  cell division cycle and apoptosis regulator protein 1 isoform X8

    Conserved Domains (3) summary
    PRK10927
    Location:176 → 295
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:976 → 1085
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:140 → 180
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11495825..11521780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040675311.2 → XP_040531245.1  cell division cycle and apoptosis regulator protein 1 isoform X1

    Conserved Domains (4) summary
    smart00513
    Location:638 → 671
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:187 → 306
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1049 → 1158
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:151 → 191
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  2. XM_040675314.2 → XP_040531248.1  cell division cycle and apoptosis regulator protein 1 isoform X4

    Conserved Domains (5) summary
    smart00513
    Location:638 → 671
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:187 → 306
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1035 → 1144
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam14443
    Location:480 → 605
    DBC1
    pfam14444
    Location:148 → 204
    S1-like

  3. XM_040675316.2 → XP_040531250.1  cell division cycle and apoptosis regulator protein 1 isoform X6

    Conserved Domains (4) summary
    PRK10927
    Location:187 → 306
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:987 → 1096
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam14443
    Location:480 → 605
    DBC1
    pfam14444
    Location:148 → 204
    S1-like

  4. XM_040675312.2 → XP_040531246.1  cell division cycle and apoptosis regulator protein 1 isoform X2

    Conserved Domains (4) summary
    smart00513
    Location:636 → 669
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:185 → 304
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1047 → 1156
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:149 → 189
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  5. XM_040675317.2 → XP_040531251.1  cell division cycle and apoptosis regulator protein 1 isoform X7

    Conserved Domains (3) summary
    PRK10927
    Location:185 → 304
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:985 → 1094
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:149 → 189
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  6. XM_040675313.2 → XP_040531247.1  cell division cycle and apoptosis regulator protein 1 isoform X3

    Conserved Domains (5) summary
    smart00513
    Location:627 → 660
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:176 → 295
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1038 → 1147
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam14443
    Location:469 → 594
    DBC1
    pfam14444
    Location:137 → 193
    S1-like

  7. XM_040675315.2 → XP_040531249.1  cell division cycle and apoptosis regulator protein 1 isoform X5

    Conserved Domains (4) summary
    smart00513
    Location:627 → 660
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PRK10927
    Location:176 → 295
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:1024 → 1133
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:140 → 180
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  8. XM_040675318.2 → XP_040531252.1  cell division cycle and apoptosis regulator protein 1 isoform X8

    Conserved Domains (3) summary
    PRK10927
    Location:176 → 295
    PRK10927; cell division protein FtsN
    TIGR04523
    Location:976 → 1085
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl09927
    Location:140 → 180
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
Nucleotide Protein Strain
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