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ARID4A AT-rich interaction domain 4A [ Gallus gallus (chicken) ]

Gene ID: 423541, updated on 17-Aug-2024

Summary

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Symbol
ARID4Aprovided by CGNC
Full Name
AT-rich interaction domain 4Aprovided by CGNC
Primary source
CGNC:51990
See related
Ensembl:ENSGALG00010017384
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See ARID4A in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (54818294..54863155, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (54857971..54902777, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124418383 Neighboring gene translocase of inner mitochondrial membrane 9 Neighboring gene uncharacterized LOC121111032 Neighboring gene uncharacterized LOC124418042 Neighboring gene proteasome subunit alpha 3 Neighboring gene transfer RNA lysine (anticodon CUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The chicken talpid3 gene encodes a novel protein essential for Hedgehog signaling. Davey MG, et al. Genes Dev, 2006 May 15. PMID 16702409, Free PMC Article
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 4A
Names
AT rich interactive domain 4A (RBP1-like)
retinoblastoma-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012902.3 → NP_001012920.1  AT-rich interactive domain-containing protein 4A

    See identical proteins and their annotated locations for NP_001012920.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000215
    UniProtKB/TrEMBL
    A0A8V0Z0M3, Q5ZIS6
    Related
    ENSGALP00010024614.1, ENSGALT00010042044.1
    Conserved Domains (5) summary
    cd16882
    Location:311 → 397
    ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd18641
    Location:576 → 634
    CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
    pfam08169
    Location:170 → 261
    RBB1NT; RBB1NT (NUC162) domain
    cd20459
    Location:4 → 61
    Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd20461
    Location:62 → 121
    Tudor_ARID4A_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    54818294..54863155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015287509.4 → XP_015142995.2  AT-rich interactive domain-containing protein 4A isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z0M3
    Conserved Domains (3) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    cd16882
    Location:311 → 397
    ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd18641
    Location:576 → 634
    CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins

  2. XM_015287508.4 → XP_015142994.2  AT-rich interactive domain-containing protein 4A isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z0M3, Q1G7H0
    Conserved Domains (5) summary
    cd16882
    Location:311 → 397
    ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd18641
    Location:576 → 634
    CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
    pfam08169
    Location:170 → 261
    RBB1NT; RBB1NT (NUC162) domain
    cd20459
    Location:4 → 61
    Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd20461
    Location:62 → 121
    Tudor_ARID4A_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

  3. XM_015287507.4 → XP_015142993.2  AT-rich interactive domain-containing protein 4A isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z0L9, A0A8V0Z0M3
    Related
    ENSGALP00010024603.1, ENSGALT00010042027.1
    Conserved Domains (3) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    cd16882
    Location:311 → 397
    ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd18641
    Location:576 → 634
    CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    54857971..54902777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046918761.1 → XP_046774717.1  AT-rich interactive domain-containing protein 4A isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z0M3

  2. XM_046918760.1 → XP_046774716.1  AT-rich interactive domain-containing protein 4A isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z0M3

  3. XM_046918759.1 → XP_046774715.1  AT-rich interactive domain-containing protein 4A isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z0M3
Nucleotide Protein Strain
Heading Accession and Version

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