U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DEAF1 DEAF1 transcription factor [ Gallus gallus (chicken) ]

Gene ID: 423017, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
DEAF1provided by CGNC
Official Full Name
DEAF1 transcription factorprovided by CGNC
Primary source
CGNC:3787
See related
Ensembl:ENSGALG00010022239
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See DEAF1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (724910..744162)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (719502..738752)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene EPS8 like 2 Neighboring gene uncharacterized LOC107053358 Neighboring gene transmembrane protein 80 Neighboring gene microRNA 6579-2 Neighboring gene uncharacterized LOC121110886 Neighboring gene dopamine receptor D4 Neighboring gene secretin

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
deformed epidermal autoregulatory factor 1 homolog
Names
DEAF-1 related transcriptional regulator
suppressin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001137649.1 → NP_001131121.1  deformed epidermal autoregulatory factor 1 homolog

    See identical proteins and their annotated locations for NP_001131121.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ217173
    UniProtKB/TrEMBL
    A0A8V0ZUY0, B6UV99
    Related
    ENSGALP00010032656.1, ENSGALT00010054125.1
    Conserved Domains (2) summary
    pfam01342
    Location:178 → 252
    SAND; SAND domain
    pfam01753
    Location:485 → 521
    zf-MYND; MYND finger

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    724910..744162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015286218.4 → XP_015141704.1  deformed epidermal autoregulatory factor 1 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZUY0
    Conserved Domains (2) summary
    pfam01342
    Location:178 → 252
    SAND; SAND domain
    pfam01753
    Location:507 → 534
    zf-MYND; MYND finger

  2. XM_015286216.4 → XP_015141702.1  deformed epidermal autoregulatory factor 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZUY0
    Related
    ENSGALP00010032645.1, ENSGALT00010054114.1
    Conserved Domains (2) summary
    pfam01342
    Location:178 → 252
    SAND; SAND domain
    pfam01753
    Location:507 → 543
    zf-MYND; MYND finger

  3. XM_040700794.2 → XP_040556728.1  deformed epidermal autoregulatory factor 1 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZUY0
    Conserved Domains (1) summary
    smart00258
    Location:182 → 253
    SAND; SAND domain

  4. XM_015286217.4 → XP_015141703.1  deformed epidermal autoregulatory factor 1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZUY0
    Conserved Domains (2) summary
    pfam01342
    Location:178 → 252
    SAND; SAND domain
    pfam01753
    Location:506 → 542
    zf-MYND; MYND finger

  5. XM_025150659.3 → XP_025006427.1  deformed epidermal autoregulatory factor 1 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZUY0
    Conserved Domains (1) summary
    pfam01342
    Location:178 → 252
    SAND; SAND domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    719502..738752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046918096.1 → XP_046774052.1  deformed epidermal autoregulatory factor 1 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZUY0

  2. XM_046918094.1 → XP_046774050.1  deformed epidermal autoregulatory factor 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZUY0

  3. XM_046918097.1 → XP_046774053.1  deformed epidermal autoregulatory factor 1 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZUY0

  4. XM_046918095.1 → XP_046774051.1  deformed epidermal autoregulatory factor 1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZUY0

  5. XM_046918098.1 → XP_046774054.1  deformed epidermal autoregulatory factor 1 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZUY0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials