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HTT huntingtin [ Gallus gallus (chicken) ]

Gene ID: 422878, updated on 17-Aug-2024

Summary

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Symbol
HTTprovided by CGNC
Full Name
huntingtinprovided by CGNC
Primary source
CGNC:11658
See related
Ensembl:ENSGALG00010016385
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
HD
Orthologs
human mouse all
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Genomic context

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See HTT in Genome Data Viewer
Location:
chromosome: 4
Exon count:
67
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (81638780..81716852, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (81616834..81694899, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene regulator of G-protein signaling 12 Neighboring gene Myb/SANT DNA binding domain containing 1 Neighboring gene G protein-coupled receptor kinase 4 Neighboring gene NOP14 nucleolar protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
huntingtin; LOW QUALITY PROTEIN: huntingtin
Names
huntingtin (Huntington disease)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    81638780..81716852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_420822.8 → XP_420822.3  LOW QUALITY PROTEIN: huntingtin isoform X1

    UniProtKB/TrEMBL
    A0A8V0YVY1
    Related
    ENSGALP00010022779.1, ENSGALT00010039477.1
    Conserved Domains (2) summary
    pfam12372
    Location:1479 → 1505
    DUF3652; Huntingtin protein region
    sd00044
    Location:77 → 99
    HEAT; HEAT repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    81616834..81694899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040670153.2 → XP_040526087.1  huntingtin isoform X3

    UniProtKB/TrEMBL
    A0A8V0YVK5
    Conserved Domains (1) summary
    sd00044
    Location:77 → 99
    HEAT; HEAT repeat [structural motif]

  2. XM_040670154.2 → XP_040526088.1  huntingtin isoform X1

    UniProtKB/TrEMBL
    A0A8V0YVY1
    Conserved Domains (1) summary
    sd00044
    Location:77 → 99
    HEAT; HEAT repeat [structural motif]

  3. XM_040670152.2 → XP_040526086.1  huntingtin isoform X2

    UniProtKB/TrEMBL
    A0A8V0YVY1
    Conserved Domains (1) summary
    sd00044
    Location:77 → 99
    HEAT; HEAT repeat [structural motif]

  4. XM_040670155.2 → XP_040526089.1  huntingtin isoform X4

    UniProtKB/TrEMBL
    A0A8V0YVJ5
    Conserved Domains (1) summary
    sd00044
    Location:77 → 99
    HEAT; HEAT repeat [structural motif]

RNA

  1. XR_005849287.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials