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TDRP testis development related protein [ Gallus gallus (chicken) ]

Gene ID: 421905, updated on 17-Aug-2024

Summary

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Official Symbol
TDRPprovided by CGNC
Official Full Name
testis development related proteinprovided by CGNC
Primary source
CGNC:12238
See related
Ensembl:ENSGALG00010003703
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
Inm01; TDRP1; TDRP2; C8ORF42; C3H8orf42
Orthologs
human mouse all
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Genomic context

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See TDRP in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (91300968..91328127)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (91103756..91131069)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene DLG associated protein 2 Neighboring gene glutamate rich 1 Neighboring gene F-box protein 25 Neighboring gene family with sequence similarity 110 member C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
testis development-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    91300968..91328127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015284928.4 → XP_015140414.1  testis development-related protein isoform X1

    UniProtKB/TrEMBL
    A0A1D5NYN9
    Related
    ENSGALP00010005001.1, ENSGALT00010008545.1
    Conserved Domains (1) summary
    pfam15683
    Location:62 → 206
    TDRP; Testis development-related protein

  2. XM_015284929.4 → XP_015140415.1  testis development-related protein isoform X2

    Conserved Domains (1) summary
    pfam15683
    Location:42 → 186
    TDRP; Testis development-related protein

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    91103756..91131069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040666868.2 → XP_040522802.1  testis development-related protein isoform X1

    UniProtKB/TrEMBL
    A0A1D5NYN9
    Conserved Domains (1) summary
    pfam15683
    Location:62 → 206
    TDRP; Testis development-related protein

  2. XM_040666869.2 → XP_040522803.1  testis development-related protein isoform X2

    Conserved Domains (1) summary
    pfam15683
    Location:42 → 186
    TDRP; Testis development-related protein
Nucleotide Protein
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