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CCNC cyclin C [ Gallus gallus (chicken) ]

Gene ID: 421791, updated on 10-Oct-2024

Summary

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Symbol
CCNCprovided by CGNC
Full Name
cyclin Cprovided by CGNC
Primary source
CGNC:11532
See related
Ensembl:ENSGALG00010004238
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
cyclin-C
Orthologs
human mouse all
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Genomic context

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See CCNC in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (71093192..71111048)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (70867648..70885500)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene SIM bHLH transcription factor 1 Neighboring gene PR/SET domain 13 Neighboring gene uncharacterized LOC421792 Neighboring gene ubiquitin specific peptidase 45 Neighboring gene PNN interacting serine and arginine rich protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Alternatively spliced cyclin C mRNA is widely expressed, cell cycle regulated, and encodes a truncated cyclin box. Li H, et al. Oncogene, 1996 Aug 15. PMID 8761291
  2. Analysis of chicken embryonic gonad expressed sequenced tags. Shin JH, et al. Anim Genet, 2006 Feb. PMID 16441308
  3. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001167765.2 → NP_001161237.1  cyclin-C

    See identical proteins and their annotated locations for NP_001161237.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000065
    UniProtKB/Swiss-Prot
    P55168
    UniProtKB/TrEMBL
    A0A8V0XCC8
    Related
    ENSGALP00010005787.1, ENSGALT00010009904.1
    Conserved Domains (2) summary
    cd20513
    Location:40 → 146
    CYCLIN_CCNC_rpt1; first cyclin box found in cyclin-C (CCNC) and similar proteins
    cd20514
    Location:154 → 245
    CYCLIN_CCNC_rpt2; second cyclin box found in cyclin-C (CCNC) and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    71093192..71111048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046938881.1 → XP_046794837.1  cyclin-C isoform X2

    UniProtKB/TrEMBL
    A0A8V0XLW3
    Related
    ENSGALP00010005782.1, ENSGALT00010009899.1

  2. XM_025148741.3 → XP_025004509.1  cyclin-C isoform X1

    UniProtKB/TrEMBL
    A0A8V0XCC8
    Conserved Domains (1) summary
    cl28538
    Location:1 → 270
    CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

  3. XM_046938882.1 → XP_046794838.1  cyclin-C isoform X2

    UniProtKB/TrEMBL
    A0A8V0XLW3
    Related
    ENSGALP00010005780.1, ENSGALT00010009897.1

  4. XM_046938883.1 → XP_046794839.1  cyclin-C isoform X2

    UniProtKB/TrEMBL
    A0A8V0XLW3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    70867648..70885500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046914055.1 → XP_046770011.1  cyclin-C isoform X2

    UniProtKB/TrEMBL
    A0A8V0XLW3

  2. XM_046914054.1 → XP_046770010.1  cyclin-C isoform X1

  3. XM_046914056.1 → XP_046770012.1  cyclin-C isoform X2

    UniProtKB/TrEMBL
    A0A8V0XLW3

  4. XM_046914057.1 → XP_046770013.1  cyclin-C isoform X2

    UniProtKB/TrEMBL
    A0A8V0XLW3
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P55168.1 GenPept UniProtKB/Swiss-Prot:P55168

Gene LinkOut

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