U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VIT vitrin [ Gallus gallus (chicken) ]

Gene ID: 421471, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
VITprovided by CGNC
Full Name
vitrinprovided by CGNC
Primary source
CGNC:8037
See related
Ensembl:ENSGALG00010007514
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
AKH
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (31820100..31864718, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (31747227..31791844, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene HEAT repeat containing 5B Neighboring gene striatin Neighboring gene uncharacterized LOC107052893 Neighboring gene rhodopsin, GQ-coupled-like Neighboring gene uncharacterized LOC107052892 Neighboring gene uncharacterized LOC124417826

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Novel soluble molecule, Akhirin, is expressed in the embryonic chick eyes and exhibits heterophilic cell-adhesion activity. Ahsan M, et al. Dev Dyn, 2005 May. PMID 15765510

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. involved in eye development
    Title: Novel soluble molecule, Akhirin, is expressed in the embryonic chick eyes and exhibits heterophilic cell-adhesion activity.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell-substrate adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in interstitial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vitrin
Names
akhirin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024580.2 → NP_001019751.2  vitrin precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A8V0Y0V8
    Related
    ENSGALP00010009870.1, ENSGALT00010017937.1
    Conserved Domains (3) summary
    smart00603
    Location:35 → 117
    LCCL; LCCL domain
    cd01472
    Location:564 → 724
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    cl00057
    Location:363 → 526
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    31820100..31864718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015283726.4 → XP_015139212.1  vitrin isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXU7, A0A8V0XXV2
    Related
    ENSGALP00010009856.1, ENSGALT00010017916.1
    Conserved Domains (3) summary
    cd01472
    Location:551 → 711
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam03815
    Location:37 → 126
    LCCL; LCCL domain
    cl00057
    Location:350 → 513
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    31747227..31791844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046913852.1 → XP_046769808.1  vitrin isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXU7, A0A8V0XXV2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.