TRERF1 transcriptional regulating factor 1 [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: TRERF1provided by CGNC
Official Full Name: transcriptional regulating factor 1provided by CGNC
Primary source: CGNC:7515
See related: Ensembl:ENSGALG00010019000
Gene type: protein coding
RefSeq status: MODEL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	3	NC_052534.1 (22555000..22658036, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	3	NC_052575.1 (22463527..22566627, complement)

Chromosome 3 - NC_052534.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables transcription corepressor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in negative regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of histone deacetylase complex	IEA Inferred from Electronic Annotation more info	PubMed
part_of transcription regulator complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcriptional-regulating factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

22555000..22658036 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040697388.2 → XP_040553322.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:983 → 1002

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_040697391.2 → XP_040553325.1 transcriptional-regulating factor 1 isoform X4

UniProtKB/TrEMBL

A0A8V0Z8W1

Conserved Domains (2) summary

sd00017
Location:838 → 856

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:777 → 821

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_015283853.4 → XP_015139339.2 transcriptional-regulating factor 1 isoform X3

UniProtKB/TrEMBL

A0A8V0Z8W1

Related

ENSGALP00010027399.1, ENSGALT00010045990.1

Conserved Domains (2) summary

sd00017
Location:900 → 919

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:777 → 821

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_015283852.4 → XP_015139338.2 transcriptional-regulating factor 1 isoform X2

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:921 → 939

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_015283849.4 → XP_015139335.2 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5

Related

ENSGALP00010027396.1, ENSGALT00010045984.1

Conserved Domains (2) summary

sd00017
Location:983 → 1002

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_025148831.3 → XP_025004599.2 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:983 → 1002

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_046939662.1 → XP_046795618.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5
XM_040697390.2 → XP_040553324.1 transcriptional-regulating factor 1 isoform X2

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:921 → 939

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_015283850.4 → XP_015139336.2 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:983 → 1002

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_046939664.1 → XP_046795620.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5
XM_046939663.1 → XP_046795619.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5
XM_046939665.1 → XP_046795621.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

22463527..22566627 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040666403.2 → XP_040522337.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:983 → 1002

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_040666408.2 → XP_040522342.1 transcriptional-regulating factor 1 isoform X4

UniProtKB/TrEMBL

A0A8V0Z8W1

Conserved Domains (2) summary

sd00017
Location:838 → 856

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:777 → 821

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_040666407.2 → XP_040522341.1 transcriptional-regulating factor 1 isoform X3

UniProtKB/TrEMBL

A0A8V0Z8W1

Conserved Domains (2) summary

sd00017
Location:900 → 919

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:777 → 821

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_040666406.2 → XP_040522340.1 transcriptional-regulating factor 1 isoform X2

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:921 → 939

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_040666402.2 → XP_040522336.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:983 → 1002

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_040666405.2 → XP_040522339.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:983 → 1002

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_046915228.1 → XP_046771184.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5
XM_040666409.2 → XP_040522343.1 transcriptional-regulating factor 1 isoform X2

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:921 → 939

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_040666404.2 → XP_040522338.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5

Conserved Domains (2) summary

sd00017
Location:983 → 1002

ZF_C2H2; C2H2 Zn finger [structural motif]

cl21498
Location:860 → 904

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
XM_046915230.1 → XP_046771186.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5
XM_046915229.1 → XP_046771185.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5
XM_046915231.1 → XP_046771187.1 transcriptional-regulating factor 1 isoform X1

UniProtKB/TrEMBL

A0A8V0ZFQ5