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GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 [ Gallus gallus (chicken) ]

Gene ID: 420955, updated on 17-Aug-2024

Summary

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Symbol
GALNT1provided by CGNC
Full Name
polypeptide N-acetylgalactosaminyltransferase 1provided by CGNC
Primary source
CGNC:51380
See related
Ensembl:ENSGALG00010008389
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GALNT1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (83422220..83496860, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (83492772..83567376, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751251 Neighboring gene uncharacterized LOC121109597 Neighboring gene uncharacterized LOC107052662 Neighboring gene INO80 complex subunit C Neighboring gene uncharacterized LOC121109630

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
NP_001006381.1
XP_015137812.1
XP_015137813.1
XP_046767404.1
XP_046767405.1
XP_046767406.1
XP_046780484.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006381.2 → NP_001006381.1  polypeptide N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for NP_001006381.1

    Status: VALIDATED

    Source sequence(s)
    AJ450589, AJ452607, AJ720423, AJ739273, AJ739275, AJ739276, AJ739278, BU270022, BU417913, BU475186, DR426643, HAEK01026807, JAENSK010000041
    UniProtKB/TrEMBL
    Q5ZJL1
    Related
    ENSGALP00010011628.1, ENSGALT00010020080.1
    Conserved Domains (2) summary
    cd02510
    Location:119 → 419
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:432 → 548
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    83422220..83496860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015282326.3 → XP_015137812.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    Q5ZJL1
    Conserved Domains (2) summary
    cd02510
    Location:119 → 419
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:432 → 548
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_046924528.1 → XP_046780484.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    Q5ZJL1

  3. XM_015282327.3 → XP_015137813.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    Q5ZJL1
    Conserved Domains (2) summary
    cd02510
    Location:119 → 419
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:432 → 548
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    83492772..83567376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046911448.1 → XP_046767404.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    Q5ZJL1

  2. XM_046911449.1 → XP_046767405.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    Q5ZJL1

  3. XM_046911450.1 → XP_046767406.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    Q5ZJL1
Nucleotide Protein Strain
Heading Accession and Version

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