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CDK13 cyclin dependent kinase 13 [ Gallus gallus (chicken) ]

Gene ID: 420766, updated on 17-Aug-2024

Summary

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Symbol
CDK13provided by CGNC
Full Name
cyclin dependent kinase 13provided by CGNC
Primary source
CGNC:51337
See related
Ensembl:ENSGALG00010017880
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CDC2L5
Orthologs
human mouse all
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Genomic context

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See CDK13 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (49893331..49956073)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (49945960..50008746)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109703 Neighboring gene uncharacterized LOC101748400 Neighboring gene RAS like proto-oncogene A Neighboring gene uncharacterized LOC121110099 Neighboring gene uncharacterized LOC121112012 Neighboring gene uncharacterized LOC121110100 Neighboring gene M-phase specific PLK1 interacting protein Neighboring gene succinyl-CoA:glutarate-CoA transferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II CTD heptapeptide repeat kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cyclin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cyclin/CDK positive transcription elongation factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-dependent kinase 13
Names
cell division cycle 2-like 5 (cholinesterase-related cell division controller)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    49893331..49956073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040689290.2 → XP_040545224.1  cyclin-dependent kinase 13 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z3K4
    Related
    ENSGALP00010025680.1, ENSGALT00010043223.1
    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  2. XM_040689298.2 → XP_040545232.1  cyclin-dependent kinase 13 isoform X5

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  3. XM_040689306.2 → XP_040545240.1  cyclin-dependent kinase 13 isoform X6

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  4. XM_040689292.2 → XP_040545226.1  cyclin-dependent kinase 13 isoform X3

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  5. XM_040689326.2 → XP_040545260.1  cyclin-dependent kinase 13 isoform X8

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  6. XM_040689336.2 → XP_040545270.1  cyclin-dependent kinase 13 isoform X9

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  7. XM_040689291.2 → XP_040545225.1  cyclin-dependent kinase 13 isoform X2

    Conserved Domains (1) summary
    cd07864
    Location:677 → 978
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  8. XM_040689317.2 → XP_040545251.1  cyclin-dependent kinase 13 isoform X7

    Conserved Domains (1) summary
    cd07864
    Location:677 → 978
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  9. XM_040689293.2 → XP_040545227.1  cyclin-dependent kinase 13 isoform X4

    Conserved Domains (1) summary
    cd07864
    Location:677 → 978
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  10. XM_040689346.2 → XP_040545280.1  cyclin-dependent kinase 13 isoform X10

    Conserved Domains (1) summary
    cd07864
    Location:677 → 978
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    49945960..50008746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040665852.2 → XP_040521786.1  cyclin-dependent kinase 13 isoform X1

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  2. XM_040665856.2 → XP_040521790.1  cyclin-dependent kinase 13 isoform X5

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  3. XM_040665857.2 → XP_040521791.1  cyclin-dependent kinase 13 isoform X6

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  4. XM_040665854.2 → XP_040521788.1  cyclin-dependent kinase 13 isoform X3

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  5. XM_040665859.2 → XP_040521793.1  cyclin-dependent kinase 13 isoform X8

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  6. XM_040665860.2 → XP_040521794.1  cyclin-dependent kinase 13 isoform X9

    Conserved Domains (1) summary
    cd07864
    Location:678 → 979
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  7. XM_040665853.2 → XP_040521787.1  cyclin-dependent kinase 13 isoform X2

    Conserved Domains (1) summary
    cd07864
    Location:677 → 978
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  8. XM_040665858.2 → XP_040521792.1  cyclin-dependent kinase 13 isoform X7

    Conserved Domains (1) summary
    cd07864
    Location:677 → 978
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  9. XM_040665855.2 → XP_040521789.1  cyclin-dependent kinase 13 isoform X4

    Conserved Domains (1) summary
    cd07864
    Location:677 → 978
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

  10. XM_040665861.2 → XP_040521795.1  cyclin-dependent kinase 13 isoform X10

    Conserved Domains (1) summary
    cd07864
    Location:677 → 978
    STKc_CDK12; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12
Nucleotide Protein Strain
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