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POU6F2 POU class 6 homeobox 2 [ Gallus gallus (chicken) ]

Gene ID: 420763, updated on 10-Oct-2024

Summary

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Symbol
POU6F2provided by CGNC
Full Name
POU class 6 homeobox 2provided by CGNC
Primary source
CGNC:9347
See related
Ensembl:ENSGALG00010016637
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See POU6F2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (49419158..49735131)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (49467612..49787565)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109699 Neighboring gene VPS41 subunit of HOPS complex Neighboring gene uncharacterized LOC121109700 Neighboring gene uncharacterized LOC124417761 Neighboring gene Yae1 domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POU domain, class 6, transcription factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    49419158..49735131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_418861.8 → XP_418861.3  POU domain, class 6, transcription factor 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YQG3, A0A8V0YWU7
    Related
    ENSGALP00010023257.1, ENSGALT00010040127.1
    Conserved Domains (2) summary
    smart00389
    Location:626 → 682
    HOX; Homeodomain
    cl22952
    Location:496 → 605
    Pou; Pou domain - N-terminal to homeobox domain

  2. XM_040689262.2 → XP_040545196.1  POU domain, class 6, transcription factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YQG3
    Conserved Domains (2) summary
    smart00389
    Location:590 → 646
    HOX; Homeodomain
    cl22952
    Location:496 → 569
    Pou; Pou domain - N-terminal to homeobox domain

  3. XM_040689265.2 → XP_040545199.1  POU domain, class 6, transcription factor 2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YQG3, A0A8V0YYR6
    Conserved Domains (2) summary
    pfam00046
    Location:592 → 646
    Homeobox; Homeobox domain
    cl22952
    Location:459 → 568
    Pou; Pou domain - N-terminal to homeobox domain

  4. XM_046937839.1 → XP_046793795.1  POU domain, class 6, transcription factor 2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YYR6
    Related
    ENSGALP00010023253.1, ENSGALT00010040119.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    49467612..49787565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040663706.2 → XP_040519640.1  POU domain, class 6, transcription factor 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YQG3, A0A8V0YWU7
    Conserved Domains (2) summary
    smart00389
    Location:626 → 682
    HOX; Homeodomain
    cl22952
    Location:496 → 605
    Pou; Pou domain - N-terminal to homeobox domain

  2. XM_040663707.2 → XP_040519641.1  POU domain, class 6, transcription factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YQG3
    Conserved Domains (2) summary
    smart00389
    Location:590 → 646
    HOX; Homeodomain
    cl22952
    Location:496 → 569
    Pou; Pou domain - N-terminal to homeobox domain

  3. XM_040663708.2 → XP_040519642.1  POU domain, class 6, transcription factor 2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YQG3, A0A8V0YYR6
    Conserved Domains (2) summary
    pfam00046
    Location:592 → 646
    Homeobox; Homeobox domain
    cl22952
    Location:459 → 568
    Pou; Pou domain - N-terminal to homeobox domain

  4. XM_046911969.1 → XP_046767925.1  POU domain, class 6, transcription factor 2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YYR6
Nucleotide Protein Strain
Heading Accession and Version

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