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CAPN7 calpain 7 [ Gallus gallus (chicken) ]

Gene ID: 420683, updated on 17-Aug-2024

Summary

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Official Symbol
CAPN7provided by CGNC
Official Full Name
calpain 7provided by CGNC
Primary source
CGNC:8782
See related
Ensembl:ENSGALG00010015928
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
calpain-7
Orthologs
human mouse all
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Genomic context

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See CAPN7 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (41400076..41429259, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (41453642..41482556, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene methyltransferase like 6 Neighboring gene SH3 domain binding protein 5 Neighboring gene collagen type VI alpha 6 chain Neighboring gene uncharacterized LOC121112226

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    41400076..41429259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040694601.2 → XP_040550535.1  calpain-7 isoform X4

    Conserved Domains (4) summary
    smart00720
    Location:593 → 716
    calpain_III; calpain_III domain
    cd00044
    Location:214 → 538
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd02680
    Location:85 → 159
    MIT_calpain7_2; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
    cd02681
    Location:5 → 76
    MIT_calpain7_1; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

  2. XM_418783.8 → XP_418783.3  calpain-7 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z0N6
    Related
    ENSGALP00010022195.1, ENSGALT00010038384.1
    Conserved Domains (4) summary
    smart00720
    Location:687 → 810
    calpain_III; calpain_III domain
    cd00044
    Location:214 → 538
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd02680
    Location:85 → 159
    MIT_calpain7_2; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
    cd02681
    Location:5 → 76
    MIT_calpain7_1; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

  3. XM_046937989.1 → XP_046793945.1  calpain-7 isoform X2

  4. XM_015281764.4 → XP_015137250.2  calpain-7 isoform X3

    Conserved Domains (3) summary
    smart00720
    Location:577 → 700
    calpain_III; calpain_III domain
    cd00044
    Location:104 → 428
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cl00299
    Location:14 → 49
    MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    41453642..41482556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040662897.2 → XP_040518831.1  calpain-7 isoform X4

    Conserved Domains (4) summary
    smart00720
    Location:593 → 716
    calpain_III; calpain_III domain
    cd00044
    Location:214 → 538
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd02680
    Location:85 → 159
    MIT_calpain7_2; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
    cd02681
    Location:5 → 76
    MIT_calpain7_1; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

  2. XM_040662894.2 → XP_040518828.1  calpain-7 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z0N6
    Conserved Domains (4) summary
    smart00720
    Location:687 → 810
    calpain_III; calpain_III domain
    cd00044
    Location:214 → 538
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd02680
    Location:85 → 159
    MIT_calpain7_2; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
    cd02681
    Location:5 → 76
    MIT_calpain7_1; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

  3. XM_040662895.2 → XP_040518829.1  calpain-7 isoform X2

    Conserved Domains (4) summary
    smart00720
    Location:643 → 766
    calpain_III; calpain_III domain
    cd00044
    Location:170 → 494
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd02680
    Location:41 → 115
    MIT_calpain7_2; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
    cl00299
    Location:1 → 32
    MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...

  4. XM_046912391.1 → XP_046768347.1  calpain-7 isoform X2

  5. XM_040662896.2 → XP_040518830.1  calpain-7 isoform X3

    Conserved Domains (3) summary
    smart00720
    Location:577 → 700
    calpain_III; calpain_III domain
    cd00044
    Location:104 → 428
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cl00299
    Location:14 → 49
    MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
Nucleotide Protein
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