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GJD4 gap junction protein delta 4 [ Gallus gallus (chicken) ]

Gene ID: 420465, updated on 17-Aug-2024

Summary

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Symbol
GJD4provided by CGNC
Full Name
gap junction protein delta 4provided by CGNC
Primary source
CGNC:5336
See related
Ensembl:ENSGALG00010004368
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GJD4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (12776471..12783925, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (12804399..12811859, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101749139 Neighboring gene uncharacterized LOC121110102 Neighboring gene frizzled class receptor 8 Neighboring gene cyclin Y Neighboring gene uncharacterized LOC107052602 Neighboring gene translation initiation factor IF-2-like Neighboring gene cAMP responsive element modulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of connexin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gap junction delta-4 protein
Names
connexin40.1
gap junction protein, delta 4, 40.1kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12776471..12783925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015282128.4 → XP_015137614.1  gap junction delta-4 protein

    UniProtKB/TrEMBL
    A0A8V0XCV7, E1C7P9
    Related
    ENSGALP00010005961.1, ENSGALT00010010199.1
    Conserved Domains (1) summary
    pfam00029
    Location:4 → 229
    Connexin

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12804399..12811859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040665886.2 → XP_040521820.1  gap junction delta-4 protein

    UniProtKB/TrEMBL
    A0A8V0XCV7, E1C7P9
    Conserved Domains (1) summary
    pfam00029
    Location:4 → 229
    Connexin
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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