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CTHRC1 collagen triple helix repeat containing 1 [ Gallus gallus (chicken) ]

Gene ID: 420262, updated on 17-Aug-2024

Summary

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Symbol
CTHRC1provided by CGNC
Full Name
collagen triple helix repeat containing 1provided by CGNC
Primary source
CGNC:12007
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CTHRC1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (128992292..128998498)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (129199202..129205412)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene brain and acute leukemia, cytoplasmic Neighboring gene frizzled class receptor 6 Neighboring gene solute carrier family 25 member 32 Neighboring gene DDB1 and CUL4 associated factor 13 Neighboring gene regulating synaptic membrane exocytosis 2 Neighboring gene uncharacterized LOC121110137

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interplay between CTHRC1 and the SU protein of avian leukosis virus subgroup J (ALV-J) facilitates viral replication. Pang Y, et al. Virus Res, 2019 Apr 15. PMID 30797826

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. These results revealed CTHRC1 as a shutting protein is recruited by avian leukosis virus subgroup J to facilitate viral replication.
    Title: Interplay between CTHRC1 and the SU protein of avian leukosis virus subgroup J (ALV-J) facilitates viral replication.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
collagen triple helix repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    128992292..128998498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040696392.2 → XP_040552326.1  collagen triple helix repeat-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YG76

  2. XM_418373.8 → XP_418373.6  collagen triple helix repeat-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YG76

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    129199202..129205412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040666141.2 → XP_040522075.1  collagen triple helix repeat-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YG76

  2. XM_040666140.2 → XP_040522074.1  collagen triple helix repeat-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YG76
Nucleotide Protein Strain
Heading Accession and Version

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