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FKBP8 FK506 binding protein 8 [ Gallus gallus (chicken) ]

Gene ID: 420123, updated on 17-Aug-2024

Summary

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Symbol
FKBP8provided by CGNC
Full Name
FK506 binding protein 8provided by CGNC
Primary source
CGNC:2442
See related
Ensembl:ENSGALG00010027137
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See FKBP8 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (4336845..4343013)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (3899242..3905414)

Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene chromosome 19 open reading frame 60 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 Neighboring gene elongation factor for RNA polymerase II Neighboring gene microRNA mir-12258 Neighboring gene inositol-3-phosphate synthase 1 Neighboring gene single stranded DNA binding protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An expressed sequence tag analysis of the chicken reproductive tract transcriptome. Froman DP, et al. Poult Sci, 2006 Aug. PMID 16903475
  2. Development of a chicken 5 K microarray targeted towards immune function. Smith J, et al. BMC Genomics, 2006 Mar 13. PMID 16533398, Free PMC Article
  3. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  4. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peptidyl-prolyl cis-trans isomerase FKBP8
Names
FK506 binding protein 8, 38kDa
NP_001241668.2
XP_015155539.3
XP_015155540.2
XP_015155541.2
XP_040509485.1
XP_046789768.1
XP_046789769.1
XP_046789770.1
XP_046789771.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254739.2 → NP_001241668.2  peptidyl-prolyl cis-trans isomerase FKBP8

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000376
    UniProtKB/TrEMBL
    A0A8V1AEV4
    Conserved Domains (3) summary
    COG0457
    Location:187 → 333
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0545
    Location:35 → 199
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:216 → 244
    TPR; TPR repeat [structural motif]

  2. NM_001405869.1 → NP_001392798.1  peptidyl-prolyl cis-trans isomerase FKBP8

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000376
    UniProtKB/TrEMBL
    A0A8V1AEV4

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    4336845..4343013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040653551.2 → XP_040509485.1  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A2D9
    Related
    ENSGALP00010040054.1, ENSGALT00010065788.1
    Conserved Domains (3) summary
    COG0457
    Location:235 → 381
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0545
    Location:83 → 247
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:264 → 292
    TPR; TPR repeat [structural motif]

  2. XM_015300053.4 → XP_015155539.3  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A9Y8
    Related
    ENSGALP00010040053.1, ENSGALT00010065787.1
    Conserved Domains (3) summary
    COG0457
    Location:220 → 366
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0545
    Location:68 → 232
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:249 → 277
    TPR; TPR repeat [structural motif]

  3. XM_015300054.4 → XP_015155540.2  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X3

    UniProtKB/TrEMBL
    A0A8V1AEV4
    Conserved Domains (3) summary
    COG0457
    Location:187 → 333
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0545
    Location:35 → 199
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:216 → 244
    TPR; TPR repeat [structural motif]

  4. XM_015300055.4 → XP_015155541.2  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X3

    UniProtKB/TrEMBL
    A0A8V1AEV4
    Related
    ENSGALP00010040055.1, ENSGALT00010065789.1
    Conserved Domains (3) summary
    COG0457
    Location:187 → 333
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0545
    Location:35 → 199
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:216 → 244
    TPR; TPR repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3899242..3905414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046933812.1 → XP_046789768.1  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X1

  2. XM_046933813.1 → XP_046789769.1  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X2

  3. XM_046933815.1 → XP_046789771.1  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X3

  4. XM_046933814.1 → XP_046789770.1  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

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