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CACTIN cactin, spliceosome C complex subunit [ Gallus gallus (chicken) ]

Gene ID: 420073, updated on 17-Aug-2024

Summary

Official Symbol
CACTINprovided by CGNC
Official Full Name
cactin, spliceosome C complex subunitprovided by CGNC
Primary source
CGNC:51173
See related
Ensembl:ENSGALG00010028115
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C28H19orf29
Orthologs
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Genomic context

See CACTIN in Genome Data Viewer
Location:
chromosome: 28
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (1450704..1456173)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (1023452..1028891)

Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene tight junction protein 3 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase, type I, gamma Neighboring gene thromboxane A2 receptor Neighboring gene GIPC PDZ domain containing family member 3

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in negative regulation of innate immune response IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1450704..1456173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_418192.8XP_418192.4  cactin

    UniProtKB/TrEMBL
    A0A8V1AHI7
    Related
    ENSGALP00010041869.1, ENSGALT00010068126.1
    Conserved Domains (1) summary
    smart01050
    Location:611735
    CactinC_cactus; Cactus-binding C-terminus of cactin protein

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1023452..1028891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040692503.2XP_040548437.1  cactin

    UniProtKB/TrEMBL
    A0A8V1AHI7
    Conserved Domains (1) summary
    smart01050
    Location:608732
    CactinC_cactus; Cactus-binding C-terminus of cactin protein