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GRHL3 grainyhead like transcription factor 3 [ Gallus gallus (chicken) ]

Gene ID: 419695, updated on 10-Oct-2024

Summary

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Symbol
GRHL3provided by CGNC
Full Name
grainyhead like transcription factor 3provided by CGNC
Primary source
CGNC:3123
See related
Ensembl:ENSGALG00010015677
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GRHL3 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
22
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 23 NC_052554.1 (5989344..6108445)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 23 NC_052595.1 (5752636..5853835)

Chromosome 23 - NC_052554.1Genomic Context describing neighboring genes Neighboring gene proline rich nuclear receptor coactivator 2 Neighboring gene serine/arginine-rich splicing factor 10 Neighboring gene liver basic fatty acid binding protein Neighboring gene myomesin 3 Neighboring gene interferon lambda receptor 1 Neighboring gene interleukin 22 receptor subunit alpha 1 Neighboring gene interferon lambda receptor 1 Neighboring gene NIPA like domain containing 3 Neighboring gene uncharacterized LOC124417365 Neighboring gene RCAN family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
grainyhead-like protein 3 homolog
Names
grainyhead-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052554.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5989344..6108445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046903613.1 → XP_046759569.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7

  2. XM_004947905.5 → XP_004947962.1  grainyhead-like protein 3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AVX2, A0A8V0YSV8
    Related
    ENSGALP00010021809.1, ENSGALT00010037757.1
    Conserved Domains (1) summary
    pfam04516
    Location:231 → 439
    CP2; CP2 transcription factor

  3. XM_004947906.5 → XP_004947963.1  grainyhead-like protein 3 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8V0YSV8
    Conserved Domains (1) summary
    pfam04516
    Location:200 → 408
    CP2; CP2 transcription factor

  4. XM_046903612.1 → XP_046759568.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7

  5. XM_025143146.3 → XP_024998914.1  grainyhead-like protein 3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AVX2, A0A8V0YSV8
    Conserved Domains (1) summary
    pfam04516
    Location:231 → 439
    CP2; CP2 transcription factor

  6. XM_046903614.1 → XP_046759570.1  grainyhead-like protein 3 homolog isoform X4

  7. XM_046903610.1 → XP_046759566.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7

  8. XM_025143145.3 → XP_024998913.1  grainyhead-like protein 3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AVX2, A0A8V0YSV8
    Conserved Domains (1) summary
    pfam04516
    Location:231 → 439
    CP2; CP2 transcription factor

  9. XM_046903615.1 → XP_046759571.1  grainyhead-like protein 3 homolog isoform X4

  10. XM_046903611.1 → XP_046759567.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7

  11. XM_046903616.1 → XP_046759572.1  grainyhead-like protein 3 homolog isoform X5

  12. XM_004947904.5 → XP_004947961.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7, A0A8V0YSV8
    Related
    ENSGALP00010021805.1, ENSGALT00010037750.1
    Conserved Domains (1) summary
    pfam04516
    Location:240 → 448
    CP2; CP2 transcription factor

  13. XM_040651843.2 → XP_040507777.1  grainyhead-like protein 3 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8V0YSV8
    Related
    ENSGALP00010021800.1, ENSGALT00010037741.1
    Conserved Domains (1) summary
    pfam04516
    Location:212 → 420
    CP2; CP2 transcription factor

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052595.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5752636..5853835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046932099.1 → XP_046788055.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7

  2. XM_040689918.2 → XP_040545852.1  grainyhead-like protein 3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AVX2, A0A8V0YSV8
    Conserved Domains (1) summary
    pfam04516
    Location:231 → 439
    CP2; CP2 transcription factor

  3. XM_040689920.2 → XP_040545854.1  grainyhead-like protein 3 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8V0YSV8
    Conserved Domains (1) summary
    pfam04516
    Location:200 → 408
    CP2; CP2 transcription factor

  4. XM_046932098.1 → XP_046788054.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7

  5. XM_040689916.2 → XP_040545850.1  grainyhead-like protein 3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AVX2, A0A8V0YSV8
    Conserved Domains (1) summary
    pfam04516
    Location:231 → 439
    CP2; CP2 transcription factor

  6. XM_046932100.1 → XP_046788056.1  grainyhead-like protein 3 homolog isoform X4

  7. XM_046932096.1 → XP_046788052.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7

  8. XM_040689917.2 → XP_040545851.1  grainyhead-like protein 3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AVX2, A0A8V0YSV8
    Conserved Domains (1) summary
    pfam04516
    Location:231 → 439
    CP2; CP2 transcription factor

  9. XM_046932101.1 → XP_046788057.1  grainyhead-like protein 3 homolog isoform X4

  10. XM_046932097.1 → XP_046788053.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7

  11. XM_046932102.1 → XP_046788058.1  grainyhead-like protein 3 homolog isoform X5

  12. XM_040689915.2 → XP_040545849.1  grainyhead-like protein 3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5PGS7, A0A8V0YSV8
    Conserved Domains (1) summary
    pfam04516
    Location:240 → 448
    CP2; CP2 transcription factor

  13. XM_040689919.2 → XP_040545853.1  grainyhead-like protein 3 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8V0YSV8
    Conserved Domains (1) summary
    pfam04516
    Location:212 → 420
    CP2; CP2 transcription factor
Nucleotide Protein
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