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NPHP4 nephrocystin 4 [ Gallus gallus (chicken) ]

Gene ID: 419377, updated on 17-Aug-2024

Summary

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Symbol
NPHP4provided by CGNC
Full Name
nephrocystin 4provided by CGNC
Primary source
CGNC:640
See related
Ensembl:ENSGALG00010019618
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See NPHP4 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
30
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (680541..702552)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (712143..734234)

Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 5 Neighboring gene uncharacterized LOC121107367 Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 2 Neighboring gene adherens junctions associated protein 1 Neighboring gene uncharacterized LOC121107368

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary base IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nephrocystin-4
Names
nephronophthisis 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    680541..702552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046903195.1 → XP_046759151.1  nephrocystin-4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZBK5

  2. XM_015297058.4 → XP_015152544.2  nephrocystin-4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZBK5

  3. XM_003642520.6 → XP_003642568.3  nephrocystin-4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZBK5
    Related
    ENSGALP00010028045.1, ENSGALT00010047329.1

  4. XM_015297060.4 → XP_015152546.2  nephrocystin-4 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZBK5

  5. XM_015297061.3 → XP_015152547.3  nephrocystin-4 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZBK5

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    712143..734234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040688933.2 → XP_040544867.1  nephrocystin-4 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZBK5

RNA

  1. XR_006936889.1 RNA Sequence

  2. XR_005855569.2 RNA Sequence

  3. XR_005855568.2 RNA Sequence

  4. XR_005855570.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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