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ATP9A ATPase phospholipid transporting 9A (putative) [ Gallus gallus (chicken) ]

Gene ID: 419345, updated on 10-Oct-2024

Summary

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Symbol
ATP9Aprovided by CGNC
Full Name
ATPase phospholipid transporting 9A (putative)provided by CGNC
Primary source
CGNC:5985
See related
Ensembl:ENSGALG00010015362
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See ATP9A in Genome Data Viewer
Location:
chromosome: 20
Exon count:
29
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (13450938..13503307)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (13236847..13289221)

Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121107357 Neighboring gene microRNA 1687 Neighboring gene spalt like transcription factor 4 Neighboring gene nuclear factor of activated T-cells 2 Neighboring gene potassium voltage-gated channel modifier subfamily G member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phospholipid-transporting ATPase IIA
Names
ATPase, class II, type 9A
XP_015152004.1
XP_040543751.1
XP_046758861.1
XP_046786886.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    13450938..13503307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015296518.4 → XP_015152004.1  probable phospholipid-transporting ATPase IIA isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTQ8, F1NUR8
    Related
    ENSGALP00010021492.1, ENSGALT00010036917.1
    Conserved Domains (2) summary
    cd07541
    Location:55 → 967
    P-type_ATPase_APLT_Neo1-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Neo1p and human putative APLT, ATP9B
    pfam13246
    Location:464 → 571
    Cation_ATPase; Cation transport ATPase (P-type)

  2. XM_046902905.1 → XP_046758861.1  probable phospholipid-transporting ATPase IIA isoform X2

RNA

  1. XR_003071384.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    13236847..13289221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040687817.2 → XP_040543751.1  probable phospholipid-transporting ATPase IIA isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTQ8, F1NUR8
    Conserved Domains (2) summary
    cd07541
    Location:55 → 967
    P-type_ATPase_APLT_Neo1-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Neo1p and human putative APLT, ATP9B
    pfam13246
    Location:464 → 571
    Cation_ATPase; Cation transport ATPase (P-type)

  2. XM_046930930.1 → XP_046786886.1  probable phospholipid-transporting ATPase IIA isoform X2

RNA

  1. XR_005855206.2 RNA Sequence

Nucleotide Protein
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