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C11orf54 C11orf54 homolog [ Gallus gallus (chicken) ]

Gene ID: 419001, updated on 10-Oct-2024

Summary

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Official Symbol
C11orf54provided by CGNC
Official Full Name
C11orf54 homologprovided by CGNC
Primary source
CGNC:12940
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C1H11ORF54
Orthologs
human mouse all
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Genomic context

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See C11orf54 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (185679804..185689198, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (185723832..185733196, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107052349 Neighboring gene V-set and transmembrane domain containing 5 Neighboring gene mediator complex subunit 17 Neighboring gene small nucleolar RNA SNORD5 Neighboring gene TATA-box binding protein associated factor, RNA polymerase I subunit D Neighboring gene small nucleolar RNA SNORA40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ester hydrolase C11orf54 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277277.2 → NP_001264206.2  ester hydrolase C11orf54 homolog

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000027
    UniProtKB/TrEMBL
    A0A8V0Y7M7
    Conserved Domains (1) summary
    cd17298
    Location:15 → 305
    DUF1907; proteins similar to putative ester hydrolase C11orf54/PTD012

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    185679804..185689198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046942115.1 → XP_046798071.1  ester hydrolase C11orf54 homolog isoform X2

  2. XM_040700391.2 → XP_040556325.1  ester hydrolase C11orf54 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7M7
    Conserved Domains (1) summary
    cd17298
    Location:15 → 305
    DUF1907; proteins similar to putative ester hydrolase C11orf54/PTD012

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    185723832..185733196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046908359.1 → XP_046764315.1  ester hydrolase C11orf54 homolog isoform X2

  2. XM_046908358.1 → XP_046764314.1  ester hydrolase C11orf54 homolog isoform X1

  3. XM_046908357.1 → XP_046764313.1  ester hydrolase C11orf54 homolog isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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