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SERPINF1 serpin family F member 1 [ Gallus gallus (chicken) ]

Gene ID: 417561, updated on 10-Oct-2024

Summary

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Official Symbol
SERPINF1provided by CGNC
Official Full Name
serpin family F member 1provided by CGNC
Primary source
CGNC:2160
See related
Ensembl:ENSGALG00010029387
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SERPINF1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (5892301..5899172)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (5628969..5635844)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 81 Neighboring gene serpin family F member 2 Neighboring gene SET and MYND domain containing 4 Neighboring gene replication protein A1 Neighboring gene reticulon 4 receptor like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of chicken embryonic gonad expressed sequenced tags. Shin JH, et al. Anim Genet, 2006 Feb. PMID 16441308
  2. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pigment epithelium-derived factor
Names
serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
serine (or cysteine) proteinase inhibitor, clade F, member 1
serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257289.2 → NP_001244218.2  pigment epithelium-derived factor precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    UniProtKB/TrEMBL
    A0A8V1AK00
    Related
    ENSGALP00010043769.1, ENSGALT00010071078.1
    Conserved Domains (1) summary
    cd02052
    Location:39 → 411
    serpinF1_PEDF; serpin family F member 1, Pigment epithelium-derived factor (PEDF)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5892301..5899172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040650077.2 → XP_040506011.1  pigment epithelium-derived factor isoform X1

    UniProtKB/TrEMBL
    A0A8V1AK00
    Conserved Domains (1) summary
    cd02052
    Location:39 → 411
    serpinF1_PEDF; serpin family F member 1, Pigment epithelium-derived factor (PEDF)

  2. XM_015295746.4 → XP_015151232.2  pigment epithelium-derived factor isoform X1

    UniProtKB/TrEMBL
    A0A8V1AK00
    Conserved Domains (1) summary
    cd02052
    Location:39 → 411
    serpinF1_PEDF; serpin family F member 1, Pigment epithelium-derived factor (PEDF)

  3. XM_025141957.3 → XP_024997725.2  pigment epithelium-derived factor isoform X1

    UniProtKB/TrEMBL
    A0A8V1AK00
    Conserved Domains (1) summary
    cd02052
    Location:39 → 411
    serpinF1_PEDF; serpin family F member 1, Pigment epithelium-derived factor (PEDF)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5628969..5635844
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046930082.1 → XP_046786038.1  pigment epithelium-derived factor isoform X1

  2. XM_046930080.1 → XP_046786036.1  pigment epithelium-derived factor isoform X1

  3. XM_046930081.1 → XP_046786037.1  pigment epithelium-derived factor isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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