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FAM104A family with sequence similarity 104 member A [ Gallus gallus (chicken) ]

Gene ID: 417450, updated on 10-Oct-2024

Summary

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Symbol
FAM104Aprovided by CGNC
Full Name
family with sequence similarity 104 member Aprovided by CGNC
Primary source
CGNC:66279
See related
Ensembl:ENSGALG00010029477
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See FAM104A in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 18 NC_052549.1 (9618675..9628039, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 18 NC_052590.1 (9218650..9228020, complement)

Chromosome 18 - NC_052549.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 11 Neighboring gene somatostatin receptor 2 Neighboring gene component of oligomeric golgi complex 1 Neighboring gene chromosome 18 open reading frame, human C17orf80 Neighboring gene cleavage and polyadenylation specific factor 4 like Neighboring gene CDC42 effector protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein VCF1; protein FAM104A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030708.2 → NP_001025879.1  protein VCF1

    See identical proteins and their annotated locations for NP_001025879.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000317
    UniProtKB/TrEMBL
    A0A8V1ANW2, Q5ZKJ7
    Related
    ENSGALP00010043970.1, ENSGALT00010071279.1
    Conserved Domains (1) summary
    pfam15434
    Location:21 → 149
    FAM104; Family 104

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052549.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9618675..9628039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040649506.2 → XP_040505440.1  protein FAM104A isoform X5

    UniProtKB/TrEMBL
    A0A8V1ANW2
    Related
    ENSGALP00010043965.1, ENSGALT00010071274.1

  2. XM_015279898.4 → XP_015135384.2  protein FAM104A isoform X2

    UniProtKB/TrEMBL
    A0A8V1ANW2

  3. XM_040649507.2 → XP_040505441.1  protein FAM104A isoform X6

    UniProtKB/TrEMBL
    A0A8V1AMC4
    Related
    ENSGALP00010043967.1, ENSGALT00010071276.1

  4. XM_040649505.2 → XP_040505439.1  protein FAM104A isoform X3

  5. XM_015279901.4 → XP_015135387.2  protein FAM104A isoform X7

  6. XM_015279899.4 → XP_015135385.2  protein FAM104A isoform X4

    UniProtKB/TrEMBL
    A0A8V1AIJ7
    Related
    ENSGALP00010043971.1, ENSGALT00010071280.1

  7. XM_015279897.4 → XP_015135383.2  protein FAM104A isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKE4, A0A8V1ANW2
    Related
    ENSGALP00010043968.1, ENSGALT00010071277.1

  8. XM_025141606.3 → XP_024997374.2  protein FAM104A isoform X8

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052590.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9218650..9228020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046929444.1 → XP_046785400.1  protein FAM104A isoform X5

  2. XM_046929441.1 → XP_046785397.1  protein FAM104A isoform X2

  3. XM_046929445.1 → XP_046785401.1  protein FAM104A isoform X6

    UniProtKB/TrEMBL
    A0A8V1AMC4

  4. XM_046929442.1 → XP_046785398.1  protein FAM104A isoform X3

  5. XM_046929446.1 → XP_046785402.1  protein FAM104A isoform X7

  6. XM_046929443.1 → XP_046785399.1  protein FAM104A isoform X4

    UniProtKB/TrEMBL
    A0A8V1AIJ7

  7. XM_046929440.1 → XP_046785396.1  protein FAM104A isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKE4

  8. XM_046929447.1 → XP_046785403.1  protein FAM104A isoform X8

Nucleotide Protein Strain
Heading Accession and Version

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