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EWSR1 EWS RNA binding protein 1 [ Gallus gallus (chicken) ]

Gene ID: 417022, updated on 10-Oct-2024

Summary

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Symbol
EWSR1provided by CGNC
Full Name
EWS RNA binding protein 1provided by CGNC
Primary source
CGNC:50409
See related
Ensembl:ENSGALG00010000341
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See EWSR1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (11154603..11175765, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (11166596..11187763, complement)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 1 beta 1 subunit Neighboring gene small nucleolar RNA SNORD125 Neighboring gene growth arrest specific 2 like 1 Neighboring gene EMI domain containing 1 Neighboring gene deltex E3 ubiquitin ligase 1 Neighboring gene RAS protein activator like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expressed sequence tag analysis of Eimeria-stimulated intestinal intraepithelial lymphocytes in chickens. Min W, et al. Mol Biotechnol, 2005 Jun. PMID 15920284
  2. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  4. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein EWS
Names
Ewing sarcoma breakpoint region 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039267.2 → NP_001034356.2  RNA-binding protein EWS

    Status: VALIDATED

    Source sequence(s)
    AJ719366, BU112184, CD740517, CN219106
    UniProtKB/TrEMBL
    A0A8V0X7E7
    Related
    ENSGALP00010000370.1, ENSGALT00010000650.1
    Conserved Domains (5) summary
    COG0724
    Location:351 → 456
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12533
    Location:362 → 445
    RRM_EWS; RNA recognition motif in vertebrate Ewing Sarcoma Protein (EWS)
    sd00025
    Location:528 → 549
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:524 → 553
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam07223
    Location:10 → 246
    DUF1421; Protein of unknown function (DUF1421)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    11154603..11175765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015294855.4 → XP_015150341.3  RNA-binding protein EWS isoform X3

  2. XM_015294854.4 → XP_015150340.3  RNA-binding protein EWS isoform X2

  3. XM_015294853.4 → XP_015150339.3  RNA-binding protein EWS isoform X1

  4. XM_015294856.4 → XP_015150342.3  RNA-binding protein EWS isoform X4

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11166596..11187763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046928249.1 → XP_046784205.1  RNA-binding protein EWS isoform X3

  2. XM_046928248.1 → XP_046784204.1  RNA-binding protein EWS isoform X2

  3. XM_046928247.1 → XP_046784203.1  RNA-binding protein EWS isoform X1

  4. XM_046928250.1 → XP_046784206.1  RNA-binding protein EWS isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials