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NRF1 nuclear respiratory factor 1 [ Gallus gallus (chicken) ]

Gene ID: 416677, updated on 10-Oct-2024

Summary

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Symbol
NRF1provided by CGNC
Full Name
nuclear respiratory factor 1provided by CGNC
Primary source
CGNC:6034
See related
Ensembl:ENSGALG00010005546
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
IBR/F
Orthologs
human mouse all
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Genomic context

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See NRF1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (1330249..1378306)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (1337037..1385093)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene striatin interacting protein 2 Neighboring gene uncharacterized LOC107053537 Neighboring gene small lysine-rich protein 1 Neighboring gene uncharacterized LOC121109257 Neighboring gene microRNA mir-182 Neighboring gene microRNA mir-96

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Initiation binding repressor, a factor that binds to the transcription initiation site of the histone h5 gene, is a glycosylated member of a family of cell growth regulators [corrected]. Gómez-Cuadrado A, et al. Mol Cell Biol, 1995 Dec. PMID 8524232, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear respiratory factor 1
Names
transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030646.2 → NP_001025817.1  nuclear respiratory factor 1

    See identical proteins and their annotated locations for NP_001025817.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000006
    UniProtKB/TrEMBL
    A0A8V0XPL9, Q90979
    Related
    ENSGALP00010007828.1, ENSGALT00010013266.1
    Conserved Domains (2) summary
    pfam10492
    Location:450 → 493
    Nrf1_activ_bdg; Nrf1 activator activation site binding domain
    pfam10491
    Location:87 → 283
    Nrf1_DNA-bind; NLS-binding and DNA-binding and dimerization domains of Nrf1

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1330249..1378306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040676973.2 → XP_040532907.1  nuclear respiratory factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2U3T8, A0A8V0XPL9
    Related
    ENSGALP00010007835.1, ENSGALT00010013273.1
    Conserved Domains (2) summary
    pfam10492
    Location:468 → 512
    Nrf1_activ_bdg; Nrf1 activator activation site binding domain
    pfam10491
    Location:87 → 283
    Nrf1_DNA-bind; NLS-binding and DNA-binding and dimerization domains of Nrf1

  2. XM_015282528.4 → XP_015138014.2  nuclear respiratory factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XPM4
    Related
    ENSGALP00010007833.1, ENSGALT00010013271.1

  3. XM_015282685.4 → XP_015138171.1  nuclear respiratory factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2U3T8, A0A8V0XPL9
    Conserved Domains (2) summary
    pfam10492
    Location:468 → 512
    Nrf1_activ_bdg; Nrf1 activator activation site binding domain
    pfam10491
    Location:87 → 283
    Nrf1_DNA-bind; NLS-binding and DNA-binding and dimerization domains of Nrf1

  4. XM_015282769.4 → XP_015138255.1  nuclear respiratory factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XPL9, Q90979
    Conserved Domains (2) summary
    pfam10492
    Location:450 → 493
    Nrf1_activ_bdg; Nrf1 activator activation site binding domain
    pfam10491
    Location:87 → 283
    Nrf1_DNA-bind; NLS-binding and DNA-binding and dimerization domains of Nrf1

  5. XM_015282417.4 → XP_015137903.2  nuclear respiratory factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XPM4

  6. XM_046927245.1 → XP_046783201.1  nuclear respiratory factor 1 isoform X1

  7. XM_015282649.4 → XP_015138135.2  nuclear respiratory factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XPM4

  8. XM_015282586.4 → XP_015138072.2  nuclear respiratory factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XPM4

  9. XM_015282728.4 → XP_015138214.1  nuclear respiratory factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XI53, A0A8V0XPM4
    Related
    ENSGALP00010007831.1, ENSGALT00010013269.1
    Conserved Domains (1) summary
    pfam10491
    Location:87 → 283
    Nrf1_DNA-bind; NLS-binding and DNA-binding and dimerization domains of Nrf1

  10. XM_040677173.2 → XP_040533107.1  nuclear respiratory factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XPL9

  11. XM_025147172.3 → XP_025002940.2  nuclear respiratory factor 1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XPM4

  12. XM_046927640.1 → XP_046783596.1  nuclear respiratory factor 1 isoform X6

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1337037..1385093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046907003.1 → XP_046762959.1  nuclear respiratory factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2U3T8

  2. XM_046906998.1 → XP_046762954.1  nuclear respiratory factor 1 isoform X1

  3. XM_046907002.1 → XP_046762958.1  nuclear respiratory factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2U3T8

  4. XM_046907005.1 → XP_046762961.1  nuclear respiratory factor 1 isoform X4

    UniProtKB/TrEMBL
    Q90979

  5. XM_046906997.1 → XP_046762953.1  nuclear respiratory factor 1 isoform X1

  6. XM_046906999.1 → XP_046762955.1  nuclear respiratory factor 1 isoform X1

  7. XM_046907001.1 → XP_046762957.1  nuclear respiratory factor 1 isoform X1

  8. XM_046907000.1 → XP_046762956.1  nuclear respiratory factor 1 isoform X1

  9. XM_046907004.1 → XP_046762960.1  nuclear respiratory factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XI53

  10. XM_046907006.1 → XP_046762962.1  nuclear respiratory factor 1 isoform X5

  11. XM_046907007.1 → XP_046762963.1  nuclear respiratory factor 1 isoform X6

  12. XM_046907008.1 → XP_046762964.1  nuclear respiratory factor 1 isoform X6

Nucleotide Protein
Heading Accession and Version

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