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SKP1 S-phase kinase-associated protein 1 [ Gallus gallus (chicken) ]

Gene ID: 416319, updated on 10-Oct-2024

Summary

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Symbol
SKP1provided by CGNC
Full Name
S-phase kinase-associated protein 1provided by CGNC
Primary source
CGNC:4880
See related
Ensembl:ENSGALG00010015876
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SKP1A; CTD-2410N18.5
Orthologs
human mouse all
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Genomic context

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See SKP1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (15511258..15520295)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (15523066..15532105)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112533436 Neighboring gene ubiquitin conjugating enzyme E2 B Neighboring gene uncharacterized LOC107054556 Neighboring gene protein phosphatase 2 catalytic subunit alpha Neighboring gene transcription factor 7 (T-cell specific, HMG-box) Neighboring gene uncharacterized LOC124417180 Neighboring gene voltage dependent anion channel 1 Neighboring gene uncharacterized LOC121106749

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic studies of Syk-interacting proteins using a novel amine-specific isotope tag and GFP nanotrap. Galan JA, et al. J Am Soc Mass Spectrom, 2011 Feb. PMID 21472591, Free PMC Article
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cullin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-phase kinase-associated protein 1
Names
S-phase kinase-associated protein 1A
cyclin-A/CDK2-associated protein p19
p19A
p19skp1
NP_001006153.1
XP_025010624.1
XP_040502854.1
XP_040502855.1
XP_046782961.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006153.2 → NP_001006153.1  S-phase kinase-associated protein 1

    See identical proteins and their annotated locations for NP_001006153.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000256
    UniProtKB/Swiss-Prot
    Q5ZKF5
    UniProtKB/TrEMBL
    A0A8V0Z0E3
    Related
    ENSGALP00010022103.1, ENSGALT00010038282.1
    Conserved Domains (2) summary
    cd18322
    Location:4 → 127
    BTB_POZ_SKP1; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
    pfam01466
    Location:113 → 160
    Skp1; Skp1 family, dimerization domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    15511258..15520295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040646920.2 → XP_040502854.1  S-phase kinase-associated protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF5
    UniProtKB/TrEMBL
    A0A8V0Z0E3
    Conserved Domains (2) summary
    cd18322
    Location:4 → 127
    BTB_POZ_SKP1; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
    pfam01466
    Location:113 → 160
    Skp1; Skp1 family, dimerization domain

  2. XM_025154856.3 → XP_025010624.1  S-phase kinase-associated protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF5
    UniProtKB/TrEMBL
    A0A8V0Z0E3
    Conserved Domains (2) summary
    cd18322
    Location:4 → 127
    BTB_POZ_SKP1; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
    pfam01466
    Location:113 → 160
    Skp1; Skp1 family, dimerization domain

  3. XM_040646921.2 → XP_040502855.1  S-phase kinase-associated protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF5
    UniProtKB/TrEMBL
    A0A8V0Z0E3
    Related
    ENSGALP00010022099.1, ENSGALT00010038277.1
    Conserved Domains (2) summary
    cd18322
    Location:4 → 127
    BTB_POZ_SKP1; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
    pfam01466
    Location:113 → 160
    Skp1; Skp1 family, dimerization domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    15523066..15532105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046927005.1 → XP_046782961.1  S-phase kinase-associated protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF5
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZKF5.1 GenPept UniProtKB/Swiss-Prot:Q5ZKF5

Gene LinkOut

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