PCDH1 protocadherin 1 [Gallus gallus (chicken)] - Gene

Summary

Symbol: PCDH1provided by CGNC
Full Name: protocadherin 1provided by CGNC
Primary source: CGNC:50187
See related: Ensembl:ENSGALG00010011619
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: protocadherin-1
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	13	NC_052544.1 (1676765..1727293)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	13	NC_052585.1 (1687003..1737523)

Chromosome 13 - NC_052544.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pcdh1-mediated cell adhesion plays an important role as neural crest cells coalesce to form the dorsal root ganglia, where it serves to sort cells to the mitotically active perimeter
Title: Chicken protocadherin-1 functions to localize neural crest cells to the dorsal root ganglia during PNS formation.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protocadherin-1

Names: cadherin; protocadherin 1 (cadherin-like 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001045827.2 → NP_001039292.2 protocadherin-1 precursor

Status: VALIDATED

Source sequence(s)

JAENSK010000256

UniProtKB/TrEMBL

A0A8V0YE05

Related

ENSGALP00010015919.1, ENSGALT00010027770.1

Conserved Domains (1) summary

cd11304
Location:504 → 600

Cadherin_repeat; Cadherin tandem repeat domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

1676765..1727293

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046900340.1 → XP_046756296.1 protocadherin-1 isoform X1

UniProtKB/TrEMBL

A0A8V0YE05
XM_015293600.4 → XP_015149086.2 protocadherin-1 isoform X2

UniProtKB/TrEMBL

A0A8V0YBS3, A0A8V0YIP5

Related

ENSGALP00010015918.1, ENSGALT00010027769.1

Conserved Domains (1) summary

cd11304
Location:504 → 600

Cadherin_repeat; Cadherin tandem repeat domain