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TSHZ3 teashirt zinc finger homeobox 3 [ Gallus gallus (chicken) ]

Gene ID: 415762, updated on 17-Aug-2024

Summary

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Symbol
TSHZ3provided by CGNC
Full Name
teashirt zinc finger homeobox 3provided by CGNC
Primary source
CGNC:3346
See related
Ensembl:ENSGALG00010024626
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
ZNF537
Orthologs
human mouse all
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Genomic context

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See TSHZ3 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (8869141..8933123, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (9213464..9275776, complement)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417139 Neighboring gene uncharacterized LOC107054300 Neighboring gene uncharacterized LOC112533279 Neighboring gene uncharacterized LOC107054298

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Teashirt 3 expression in the chick embryo reveals a remarkable association with tendon development. Manfroid I, et al. Gene Expr Patterns, 2006 Oct. PMID 16631416
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. TSHZ3 is activated in the somites by FGF8, a known inducer of the tendon marker SCX.
    Title: Teashirt 3 expression in the chick embryo reveals a remarkable association with tendon development.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
teashirt homolog 3; LOW QUALITY PROTEIN: teashirt homolog 3
Names
teashirt family zinc finger 3
zinc finger protein 537

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    8869141..8933123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040707190.2 → XP_040563124.1  teashirt homolog 3 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A0Y0
    Related
    ENSGALP00010036872.1, ENSGALT00010060112.1
    Conserved Domains (2) summary
    cd00086
    Location:819 → 887
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:145 → 167
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_015292483.4 → XP_015147969.1  teashirt homolog 3 isoform X1

    UniProtKB/TrEMBL
    F1NMF8
    Conserved Domains (2) summary
    cd00086
    Location:890 → 958
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:216 → 238
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9213464..9275776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040681136.2 → XP_040537070.1  LOW QUALITY PROTEIN: teashirt homolog 3 isoform X1

    Conserved Domains (2) summary
    cd00086
    Location:890 → 958
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:216 → 238
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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