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AARS1 alanyl-tRNA synthetase 1 [ Gallus gallus (chicken) ]

Gene ID: 415668, updated on 10-Oct-2024

Summary

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Official Symbol
AARS1provided by CGNC
Official Full Name
alanyl-tRNA synthetase 1provided by CGNC
Primary source
CGNC:50043
See related
Ensembl:ENSGALG00010021722
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
AARS
Orthologs
human mouse all
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Genomic context

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See AARS1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (1194641..1207049)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (1366991..1379399)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing Neighboring gene adrenocortical dysplasia homolog Neighboring gene uncharacterized LOC100857820 Neighboring gene uncharacterized LOC101748539 Neighboring gene heterogeneous nuclear ribonucleoprotein C-like Neighboring gene exosome component 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amino acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alanine--tRNA ligase, cytoplasmic
Names
alanyl-tRNA synthetase, cytoplasmic
NP_001005836.2
XP_015134617.1
XP_046755365.1
XP_046781386.1
XP_046781387.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005836.3 → NP_001005836.2  alanine--tRNA ligase, cytoplasmic

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000247
    UniProtKB/TrEMBL
    A0A8V0ZEK6, F1P5J5
    Related
    ENSGALP00010031729.1, ENSGALT00010052823.1
    Conserved Domains (1) summary
    PLN02900
    Location:6 → 959
    PLN02900; alanyl-tRNA synthetase

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1194641..1207049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015279131.4 → XP_015134617.1  alanine--tRNA ligase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZEK6, F1P5J5
    Related
    ENSGALP00010031705.1, ENSGALT00010052799.1
    Conserved Domains (1) summary
    PLN02900
    Location:6 → 959
    PLN02900; alanyl-tRNA synthetase

  2. XM_046899409.1 → XP_046755365.1  alanine--tRNA ligase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    F1P5J5

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1366991..1379399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046925430.1 → XP_046781386.1  alanine--tRNA ligase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    F1P5J5

  2. XM_046925431.1 → XP_046781387.1  alanine--tRNA ligase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    F1P5J5
Nucleotide Protein Strain
Heading Accession and Version

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