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SLC24A5 solute carrier family 24 member 5 [ Gallus gallus (chicken) ]

Gene ID: 415431, updated on 17-Aug-2024

Summary

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Symbol
SLC24A5provided by CGNC
Full Name
solute carrier family 24 member 5provided by CGNC
Primary source
CGNC:3627
See related
Ensembl:ENSGALG00010018219
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SLC24A5 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (10069051..10085407)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (9941742..9958115)

Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene semaphorin 6D Neighboring gene uncharacterized LOC112533183 Neighboring gene microRNA 1744 Neighboring gene myelin expression factor 2 Neighboring gene uncharacterized LOC107054178 Neighboring gene solute carrier family 12 member 1 Neighboring gene cortexin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repression of Slc24a5 can reduce pigmentation in chicken. Liu XF, et al. Front Biosci (Elite Ed), 2011 Jan 1. PMID 21196294
  2. SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Lamason RL, et al. Science, 2005 Dec 16. PMID 16357253
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium, potassium:sodium antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in melanocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/potassium/calcium exchanger 5
Names
solute carrier family 24 (sodium/potassium/calcium exchanger), member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001038497.3 → NP_001033586.3  sodium/potassium/calcium exchanger 5 precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000245
    UniProtKB/TrEMBL
    A0A8V0Z5G2, B5G557, F1NT72
    Related
    ENSGALP00010026168.1, ENSGALT00010044011.1
    Conserved Domains (1) summary
    TIGR00927
    Location:286 → 490
    2A1904; K+-dependent Na+/Ca+ exchanger

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10069051..10085407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040706313.2 → XP_040562247.1  sodium/potassium/calcium exchanger 5 isoform X2

    Conserved Domains (2) summary
    TIGR00367
    Location:76 → 399
    TIGR00367; K+-dependent Na+/Ca+ exchanger related-protein
    TIGR00927
    Location:49 → 228
    2A1904; K+-dependent Na+/Ca+ exchanger

  2. XM_040706312.2 → XP_040562246.1  sodium/potassium/calcium exchanger 5 isoform X1

    Conserved Domains (1) summary
    TIGR00927
    Location:49 → 228
    2A1904; K+-dependent Na+/Ca+ exchanger

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9941742..9958115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046924810.1 → XP_046780766.1  sodium/potassium/calcium exchanger 5 isoform X2

  2. XM_046924809.1 → XP_046780765.1  sodium/potassium/calcium exchanger 5 isoform X1

Nucleotide Protein
Heading Accession and Version

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