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CPEB1 cytoplasmic polyadenylation element binding protein 1 [ Gallus gallus (chicken) ]

Gene ID: 415326, updated on 18-Sep-2024

Summary

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Symbol
CPEB1provided by CGNC
Full Name
cytoplasmic polyadenylation element binding protein 1provided by CGNC
Primary source
CGNC:1535
See related
Ensembl:ENSGALG00010023363
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CPEB1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (1365650..1391276, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (1239461..1265084, complement)

Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene beta-2-microglobulin Neighboring gene telomere repeat binding bouquet formation protein 2 Neighboring gene small nucleolar RNA SNORA71 Neighboring gene ribosomal protein S17 Neighboring gene adaptor related protein complex 3 beta 2 subunit Neighboring gene microRNA 1688 Neighboring gene uncharacterized LOC112533211

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation factor activity, RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic polyadenylation element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001293219.3 → NP_001280148.1  cytoplasmic polyadenylation element-binding protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000245
    UniProtKB/TrEMBL
    F1NY46
    Conserved Domains (4) summary
    cd12723
    Location:309 → 411
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:422 → 507
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    pfam16366
    Location:499 → 554
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 307
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

  2. NM_001398086.1 → NP_001385015.1  cytoplasmic polyadenylation element-binding protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000245
    Conserved Domains (2) summary
    smart00360
    Location:273 → 335
    RRM; RNA recognition motif
    cd19757
    Location:470 → 510
    Bbox1; B-box-type 1 zinc finger (Bbox1)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1365650..1391276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004943630.5 → XP_004943687.1  cytoplasmic polyadenylation element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZW49
    Related
    ENSGALP00010034633.1, ENSGALT00010056953.1
    Conserved Domains (4) summary
    cd12723
    Location:309 → 416
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:427 → 512
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    pfam16366
    Location:504 → 559
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 307
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

  2. XM_040706267.2 → XP_040562201.1  cytoplasmic polyadenylation element-binding protein 1 isoform X5

    Conserved Domains (2) summary
    smart00360
    Location:273 → 340
    RRM; RNA recognition motif
    cd19757
    Location:475 → 515
    Bbox1; B-box-type 1 zinc finger (Bbox1)

  3. XM_025153817.3 → XP_025009585.1  cytoplasmic polyadenylation element-binding protein 1 isoform X4

    Conserved Domains (4) summary
    cd12723
    Location:311 → 401
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:412 → 497
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    pfam16366
    Location:489 → 544
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:4 → 309
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

  4. XM_025153816.3 → XP_025009584.1  cytoplasmic polyadenylation element-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZML4
    Related
    ENSGALP00010034630.1, ENSGALT00010056949.1
    Conserved Domains (4) summary
    cd12723
    Location:311 → 413
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:424 → 509
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    pfam16366
    Location:501 → 556
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:4 → 309
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

  5. XM_025153815.3 → XP_025009583.1  cytoplasmic polyadenylation element-binding protein 1 isoform X1

    Conserved Domains (4) summary
    cd12723
    Location:311 → 418
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:429 → 514
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    pfam16366
    Location:506 → 561
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:4 → 309
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1239461..1265084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046924688.1 → XP_046780644.1  cytoplasmic polyadenylation element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZW49

  2. XM_046924691.1 → XP_046780647.1  cytoplasmic polyadenylation element-binding protein 1 isoform X5

  3. XM_046924690.1 → XP_046780646.1  cytoplasmic polyadenylation element-binding protein 1 isoform X4

  4. XM_046924689.1 → XP_046780645.1  cytoplasmic polyadenylation element-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZML4

  5. XM_046924687.1 → XP_046780643.1  cytoplasmic polyadenylation element-binding protein 1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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