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BBS4 Bardet-Biedl syndrome 4 [ Gallus gallus (chicken) ]

Gene ID: 415318, updated on 20-Oct-2024

Summary

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Symbol
BBS4provided by CGNC
Full Name
Bardet-Biedl syndrome 4provided by CGNC
Primary source
CGNC:1264
See related
Ensembl:ENSGALG00010021586
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See BBS4 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (1714074..1748593)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (1587894..1622295)

Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene hexosaminidase subunit alpha Neighboring gene ariadne RBR E3 ubiquitin protein ligase 1 Neighboring gene ADP dependent glucokinase Neighboring gene neogenin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BBSome complex member BBS4; Bardet-Biedl syndrome 4 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277458.3 → NP_001264387.2  BBSome complex member BBS4

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000245
    UniProtKB/TrEMBL
    A0A8V0ZIY5
    Related
    ENSGALP00010031322.1, ENSGALT00010052411.1
    Conserved Domains (2) summary
    TIGR02917
    Location:80 → 397
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:101 → 129
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1714074..1748593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040706258.2 → XP_040562192.1  Bardet-Biedl syndrome 4 protein isoform X3

    Conserved Domains (2) summary
    TIGR02917
    Location:8 → 218
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:125 → 153
    TPR; TPR repeat [structural motif]

  2. XM_046898968.1 → XP_046754924.1  Bardet-Biedl syndrome 4 protein isoform X3

  3. XM_046898967.1 → XP_046754923.1  Bardet-Biedl syndrome 4 protein isoform X3

  4. XM_046898970.1 → XP_046754926.1  Bardet-Biedl syndrome 4 protein isoform X3

  5. XM_040706255.2 → XP_040562189.1  Bardet-Biedl syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZIY5, A0A8V0ZKJ3
    Related
    ENSGALP00010031319.1, ENSGALT00010052407.1
    Conserved Domains (2) summary
    TIGR02917
    Location:93 → 410
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:114 → 142
    TPR; TPR repeat [structural motif]

  6. XM_040706256.2 → XP_040562190.1  Bardet-Biedl syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZIY5, A0A8V0ZKJ3
    Conserved Domains (2) summary
    TIGR02917
    Location:93 → 410
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:114 → 142
    TPR; TPR repeat [structural motif]

  7. XM_046898969.1 → XP_046754925.1  Bardet-Biedl syndrome 4 protein isoform X3

  8. XM_040706257.2 → XP_040562191.1  Bardet-Biedl syndrome 4 protein isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZIY5
    Conserved Domains (2) summary
    TIGR02917
    Location:80 → 397
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:101 → 129
    TPR; TPR repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1587894..1622295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046924668.1 → XP_046780624.1  Bardet-Biedl syndrome 4 protein isoform X3

  2. XM_046924667.1 → XP_046780623.1  Bardet-Biedl syndrome 4 protein isoform X3

  3. XM_046924666.1 → XP_046780622.1  Bardet-Biedl syndrome 4 protein isoform X3

  4. XM_046924669.1 → XP_046780625.1  Bardet-Biedl syndrome 4 protein isoform X3

  5. XM_046924663.1 → XP_046780619.1  Bardet-Biedl syndrome 4 protein isoform X1

  6. XM_046924664.1 → XP_046780620.1  Bardet-Biedl syndrome 4 protein isoform X1

  7. XM_046924670.1 → XP_046780626.1  Bardet-Biedl syndrome 4 protein isoform X3

  8. XM_046924665.1 → XP_046780621.1  Bardet-Biedl syndrome 4 protein isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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