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LIMS1 LIM zinc finger domain containing 1 [ Gallus gallus (chicken) ]

Gene ID: 414880, updated on 10-Oct-2024

Summary

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Symbol
LIMS1provided by CGNC
Full Name
LIM zinc finger domain containing 1provided by CGNC
Primary source
CGNC:49937
See related
Ensembl:ENSGALG00010015374
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
PINCH1
Orthologs
human mouse all
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Genomic context

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See LIMS1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (136330053..136394041)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (136288385..136352341)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase family 1C member 3 Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene E3 SUMO-protein ligase RanBP2-like Neighboring gene uncharacterized LOC107051983 Neighboring gene coiled-coil domain containing 138

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PINCH-1 expression during early avian embryogenesis: implications for neural crest and heart development. Martinsen BJ, et al. Dev Dyn, 2006 Jan. PMID 16258920
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and senescent cell antigen-like-containing domain protein 1
Names
LIM and senescent cell antigen-like domains 1
particularly interesting new Cys-His protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001766.2 → NP_001001766.2  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  2. NM_001397901.1 → NP_001384830.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    UniProtKB/TrEMBL
    A0A8V0YS09
    Related
    ENSGALP00010021495.1, ENSGALT00010036930.1
    Conserved Domains (5) summary
    cd09331
    Location:72 → 130
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:133 → 184
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:197 → 247
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:253 → 306
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:314 → 367
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  3. NM_001397902.1 → NP_001384831.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    UniProtKB/TrEMBL
    A0A1D5P599
    Related
    ENSGALP00010021502.1, ENSGALT00010036946.1
    Conserved Domains (5) summary
    cd09331
    Location:47 → 105
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:108 → 159
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:172 → 222
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:228 → 281
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:289 → 342
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  4. NM_001397903.1 → NP_001384832.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform c

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    Conserved Domains (5) summary
    cd09331
    Location:23 → 81
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:84 → 135
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:148 → 198
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:204 → 257
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:265 → 318
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  5. NM_001397904.1 → NP_001384833.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform d

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    UniProtKB/TrEMBL
    Q5ZL81
    Conserved Domains (5) summary
    cd09331
    Location:23 → 81
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:84 → 135
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:148 → 198
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:204 → 257
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:265 → 318
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  6. NM_001397905.1 → NP_001384834.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform e

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    UniProtKB/TrEMBL
    A0A8V0YTT9
    Related
    ENSGALP00010021521.1, ENSGALT00010036987.1
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  7. NM_001397906.1 → NP_001384835.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform e

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    UniProtKB/TrEMBL
    A0A8V0YTT9
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  8. NM_001397907.1 → NP_001384836.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  9. NM_001397908.1 → NP_001384837.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  10. NM_001397909.1 → NP_001384838.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  11. NM_001397910.1 → NP_001384839.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform f

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    Related
    ENSGALP00010021499.1, ENSGALT00010036942.1
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    136330053..136394041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046927164.1 → XP_046783120.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X4

  2. XM_046927157.1 → XP_046783113.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YTT9

  3. XM_046927094.1 → XP_046783050.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YTT9

  4. XM_040676063.2 → XP_040531997.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YTT9, Q6IYF7
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  5. XM_046926957.1 → XP_046782913.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YS89
    Related
    ENSGALP00010021497.1, ENSGALT00010036936.1

  6. XM_040675976.2 → XP_040531910.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YTT9, Q6IYF7
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  7. XM_040675469.2 → XP_040531403.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

    UniProtKB/TrEMBL
    Q6IYF7
    Conserved Domains (5) summary
    cd09331
    Location:47 → 105
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:108 → 159
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:172 → 222
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:228 → 281
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:289 → 342
    LIM5_PINCH; The fifth LIM domain of protein PINCH

RNA

  1. XR_003073550.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    136288385..136352341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046906994.1 → XP_046762950.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YTT9

  2. XM_046906996.1 → XP_046762952.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YTT9

  3. XM_046906992.1 → XP_046762948.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YS89

  4. XM_046906995.1 → XP_046762951.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YTT9

  5. XM_046906993.1 → XP_046762949.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

RNA

  1. XR_006932650.1 RNA Sequence

Nucleotide Protein Strain
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