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cited2 Cbp/p300-interacting transactivator, with Glu/Asp rich carboxy-terminal domain, 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 407853, updated on 5-Mar-2024

Summary

Official Symbol
cited2provided by Xenbase
Official Full Name
Cbp/p300-interacting transactivator, with Glu/Asp rich carboxy-terminal domain, 2provided by Xenbase
Primary source
Xenbase:XB-GENE-495035
See related
Ensembl:ENSXETG00000041066
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
mrg1; p35srj
Orthologs
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Genomic context

See cited2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (63257141..63260097)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (66006526..66010756)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene hdc homolog, cell cycle regulator Neighboring gene taxilin beta Neighboring gene uncharacterized LOC105947420 Neighboring gene uncharacterized LOC101731496

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Clone Names

  • MGC75612

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within determination of left/right symmetry ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within heart development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in left/right pattern formation IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within positive regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within positive regulation of cell cycle ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within positive regulation of transforming growth factor beta receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in sex determination IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
cbp/p300-interacting transactivator 2
Names
TNeu124g09.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001196.1NP_001001196.1  cbp/p300-interacting transactivator 2

    See identical proteins and their annotated locations for NP_001001196.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067308
    UniProtKB/Swiss-Prot
    Q28GT4, Q6NX30
    Related
    ENSXETP00000107389.1, ENSXETT00000105725.1
    Conserved Domains (1) summary
    pfam04487
    Location:1225
    CITED; CITED

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    63257141..63260097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012962856.2XP_012818310.1  cbp/p300-interacting transactivator 2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8SLY8
    Related
    ENSXETP00000094199.1, ENSXETT00000081156.2
    Conserved Domains (1) summary
    pfam04487
    Location:57281
    CITED