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ssb Sjogren syndrome antigen B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 407847, updated on 4-Nov-2024

Summary

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Official Symbol
ssbprovided by Xenbase
Official Full Name
Sjogren syndrome antigen Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-491374
See related
Ensembl:ENSXETG00000025402 AllianceGenome:Xenbase:XB-GENE-491374
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
La; larp3; ssb-a; ssb-b
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human SSB (small RNA binding exonuclease protection factor La). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ssb in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (68415020..68421982, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (63297146..63304110, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene myosin-IIIb-like Neighboring gene ubiquitin protein ligase E3 component n-recognin 3 Neighboring gene methyltransferase 5, N6-adenosine Neighboring gene kelch like family member 23 Neighboring gene phosphatase, orphan 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC76002

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lupus La protein
Names
autoantigen La

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001455.1 → NP_001001455.1  lupus La protein

    See identical proteins and their annotated locations for NP_001001455.1

    Status: PROVISIONAL

    Source sequence(s)
    BC066784
    UniProtKB/TrEMBL
    F6XTB6, Q6NY13
    Related
    ENSXETP00000054190.2, ENSXETT00000054190.3
    Conserved Domains (3) summary
    cd08028
    Location:12 → 91
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:112 → 183
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    cd12541
    Location:231 → 307
    RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    68415020..68421982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012970270.3 → XP_012825724.1  lupus La protein isoform X1

    See identical proteins and their annotated locations for XP_012825724.1

    UniProtKB/TrEMBL
    F6XTB6, Q6NY13
    Conserved Domains (3) summary
    cd08028
    Location:12 → 91
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:112 → 183
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    cd12541
    Location:231 → 307
    RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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