serinc5 serine incorporator 5 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: serinc5provided by ZNC
Official Full Name: serine incorporator 5provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2918
See related: Ensembl:ENSDARG00000008153 AllianceGenome:ZFIN:ZDB-GENE-040426-2918
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sb:cb651; zgc:55396; wu:fb37d09
Summary: Predicted to be involved in defense response to virus; detection of virus; and innate immune response. Predicted to act upstream of or within several processes, including myelination; phospholipid metabolic process; and sphingolipid metabolic process. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in several structures, including central nervous system; hindbrain neural plate; midbrain hindbrain boundary neural keel; optic primordium; and optic vesicle. Orthologous to human SERINC5 (serine incorporator 5). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (51949725..51998471, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (51303132..51351878, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within defense response to virus	IEA Inferred from Electronic Annotation more info
involved_in defense response to virus	ISS Inferred from Sequence or Structural Similarity more info
involved_in detection of virus	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within immune system process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within innate immune response	IEA Inferred from Electronic Annotation more info
involved_in innate immune response	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within lipid metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within phospholipid biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: serine incorporator 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.