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COL6A1 collagen type VI alpha 1 chain [ Canis lupus familiaris (dog) ]

Gene ID: 403668, updated on 17-Aug-2024

Summary

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Official Symbol
COL6A1provided by VGNC
Official Full Name
collagen type VI alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:39480
See related
Ensembl:ENSCAFG00845024031
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See COL6A1 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
35
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 31 NC_051835.1 (38938729..38956907)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 31 NC_006613.4 (38528763..38546613)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 31 NC_049252.1 (39282131..39299654)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 31 NC_049291.1 (38802006..38820369)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 31 NC_049772.1 (38762850..38780772)

Chromosome 31 - NC_051835.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119867097 Neighboring gene poly(rC) binding protein 3 Neighboring gene collagen type VI alpha 2 chain Neighboring gene formimidoyltransferase cyclodeaminase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. COL6A1 related muscular dystrophy in Landseer dogs: A canine model for Ullrich congenital muscular dystrophy. Brands J, et al. Muscle Nerve, 2021 Apr. PMID 33382107
  2. A method for the large-scale cloning of nuclear proteins and nuclear targeting sequences on a functional basis. Pichon B, et al. Anal Biochem, 2000 Sep 10. PMID 10964405

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. COL6A1 related muscular dystrophy in Landseer dogs: A canine model for Ullrich congenital muscular dystrophy.
    Title: COL6A1 related muscular dystrophy in Landseer dogs: A canine model for Ullrich congenital muscular dystrophy.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(VI) chain
Names
collagen VI-alpha1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051835.1 Reference ROS_Cfam_1.0

    Range
    38938729..38956907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038443726.1 → XP_038299654.1  collagen alpha-1(VI) chain

    UniProtKB/TrEMBL
    A0A8C0Z1U8, A0A8I3S7Z3
    Related
    ENSCAFP00845033294.1, ENSCAFT00845042470.1
    Conserved Domains (2) summary
    cd01480
    Location:33 → 226
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    pfam01391
    Location:334 → 391
    Collagen; Collagen triple helix repeat (20 copies)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049291.1 Alternate UMICH_Zoey_3.1

    Range
    38802006..38820369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038518137.1 → XP_038374065.1  collagen alpha-1(VI) chain

    Conserved Domains (2) summary
    cd01480
    Location:33 → 226
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    pfam01391
    Location:334 → 391
    Collagen; Collagen triple helix repeat (20 copies)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049772.1 Alternate UNSW_CanFamBas_1.0

    Range
    38762850..38780772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038646096.1 → XP_038502024.1  collagen alpha-1(VI) chain

    Conserved Domains (2) summary
    cd01480
    Location:33 → 226
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    pfam01391
    Location:334 → 391
    Collagen; Collagen triple helix repeat (20 copies)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049252.1 Alternate UU_Cfam_GSD_1.0

    Range
    39282131..39299654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038581692.1 → XP_038437620.1  collagen alpha-1(VI) chain

    UniProtKB/TrEMBL
    A0A8C0Z1U8, A0A8I3S7Z3
    Conserved Domains (2) summary
    cd01480
    Location:33 → 226
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    pfam01391
    Location:334 → 391
    Collagen; Collagen triple helix repeat (20 copies)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006613.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    38528763..38546613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003434001.6 → XP_003434049.2  collagen alpha-1(VI) chain

    UniProtKB/TrEMBL
    A0A8C0Z1U8, A0A8I3S7Z3
    Conserved Domains (2) summary
    cd01480
    Location:33 → 226
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    pfam01391
    Location:334 → 391
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
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