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osbpl2 oxysterol binding protein like 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 403099, updated on 4-Nov-2024

Summary

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Official Symbol
osbpl2provided by Xenbase
Official Full Name
oxysterol binding protein like 2provided by Xenbase
Primary source
Xenbase:XB-GENE-855645
See related
Ensembl:ENSXETG00000002006 AllianceGenome:Xenbase:XB-GENE-855645
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
orp2; orp-2
Summary
Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 67. Orthologous to human OSBPL2 (oxysterol binding protein like 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See osbpl2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (4498050..4553332)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (1266402..1302021)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosome-associated GTPase 2 Neighboring gene histamine receptor H3 Neighboring gene ADRM1 26S proteasome ubiquitin receptor Neighboring gene laminin subunit alpha 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC75824

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lipid transport IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oxysterol-binding protein-related protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205832.1 → NP_991401.1  oxysterol-binding protein-related protein 2

    See identical proteins and their annotated locations for NP_991401.1

    Status: PROVISIONAL

    Source sequence(s)
    BC066128
    UniProtKB/TrEMBL
    A0A7D9NKU2, F6PJS9, Q6NZH8
    Related
    ENSXETP00000033032.5, ENSXETT00000033032.5
    Conserved Domains (1) summary
    pfam01237
    Location:71 → 465
    Oxysterol_BP; Oxysterol-binding protein

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    4498050..4553332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031894019.1 → XP_031749879.1  oxysterol-binding protein-related protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A7D9NKU2, F6PJS9, Q6NZH8
    Related
    ENSXETP00000004300.5, ENSXETT00000004300.5
    Conserved Domains (1) summary
    pfam01237
    Location:71 → 465
    Oxysterol_BP; Oxysterol-binding protein

  2. XM_031894020.1 → XP_031749880.1  oxysterol-binding protein-related protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A7D9NKU2, F6PJS9, Q6NZH8
    Related
    ENSXETP00000119304.1, ENSXETT00000112534.1
    Conserved Domains (1) summary
    pfam01237
    Location:71 → 465
    Oxysterol_BP; Oxysterol-binding protein

  3. XM_031894021.1 → XP_031749881.1  oxysterol-binding protein-related protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6I8SXY6
    Related
    ENSXETP00000098380.2, ENSXETT00000104138.2
    Conserved Domains (1) summary
    pfam01237
    Location:39 → 433
    Oxysterol_BP; Oxysterol-binding protein
Nucleotide Protein Strain
Heading Accession and Version

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