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h2az2b H2A.Z variant histone 2b [ Danio rerio (zebrafish) ]

Gene ID: 403077, updated on 2-Nov-2024

Summary

Official Symbol
h2az2bprovided by ZNC
Official Full Name
H2A.Z variant histone 2bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050506-24
See related
Ensembl:ENSDARG00000116491 AllianceGenome:ZFIN:ZDB-GENE-050506-24
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
h2av; h2afvb; h2afvl; h2afza; im:6896397
Summary
Predicted to be a structural constituent of chromatin. Acts upstream of or within epigenetic programming of gene expression. Predicted to be located in chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to several human genes including H2AZ1 (H2A.Z variant histone 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See h2az2b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (44984876..44994920)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (45139809..45147976)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene interleukin 1, beta Neighboring gene purine-rich element binding protein Bb Neighboring gene ventrally expressed dharma/bozozok antagonist Neighboring gene polymerase (DNA directed), mu

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of chromatin IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 
part_of nucleosome IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
H2A.Z variant histone 2b
Names
H2A histone family, member V, like
H2A histone family, member Vb
histone 2A family member ZA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001043323.2NP_001036788.1  H2A.Z variant histone 2b

    See identical proteins and their annotated locations for NP_001036788.1

    Status: VALIDATED

    Source sequence(s)
    CU633882, CU695198
    UniProtKB/TrEMBL
    A0A8M1N9C1, Q0Z946
    Related
    ENSDARP00000154835.1, ENSDART00000182520.1
    Conserved Domains (1) summary
    PLN00154
    Location:6121
    PLN00154; histone H2A; Provisional

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    44984876..44994920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)