tes testis derived transcript (3 LIM domains) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tesprovided by ZNC
Official Full Name: testis derived transcript (3 LIM domains)provided by ZNC
Primary source: ZFIN:ZDB-GENE-040718-59
See related: Ensembl:ENSDARG00000051857 AllianceGenome:ZFIN:ZDB-GENE-040718-59
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:92091
Summary: Predicted to enable zinc ion binding activity. Predicted to be located in focal adhesion. Orthologous to human TES (testin LIM domain protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 25

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (18475029..18496410)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (18378629..18400010)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in anchoring junction	IEA Inferred from Electronic Annotation more info
located_in focal adhesion	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: testin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_205720.2 → NP_991283.2 testin

Status: VALIDATED

Source sequence(s)

CT573397

UniProtKB/TrEMBL

A0A8M1PGR8, F1QNJ3

Related

ENSDARP00000068054.4, ENSDART00000073564.5

Conserved Domains (5) summary

cd09413
Location:354 → 411

LIM1_Testin; The first LIM domain of Testin

cd09416
Location:417 → 472

LIM2_Testin; The second LIM domain of Testin

cd09419
Location:479 → 537

LIM3_Testin; The third LIM domain of Testin

pfam01391
Location:295 → 350

Collagen; Collagen triple helix repeat (20 copies)

cd09829
Location:205 → 291

PET_testin; The PET domain of Testin