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LINC01344 long intergenic non-protein coding RNA 1344 [ Homo sapiens (human) ]

Gene ID: 400799, updated on 17-Sep-2024

Summary

Official Symbol
LINC01344provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1344provided by HGNC
Primary source
HGNC:HGNC:50554
See related
AllianceGenome:HGNC:50554
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GS1-122H1.2
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01344 in Genome Data Viewer
Location:
1q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (182203945..182314061, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (181560598..181673660, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (182173080..182283196, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371642 Neighboring gene Sharpr-MPRA regulatory region 10342 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:182112509-182112685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:182112694-182113362 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:182113363-182114030 Neighboring gene YPEL5 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:182199023-182199595 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:182218347-182218848 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:182231616-182231824 Neighboring gene FOXA motif-containing MPRA enhancer 10/11 Neighboring gene Sharpr-MPRA regulatory region 4291 Neighboring gene NANOG hESC enhancer GRCh37_chr1:182270844-182271361 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1617 Neighboring gene RNA, U6 small nuclear 152, pseudogene Neighboring gene ribosomal protein L18 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104175.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX096536

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    182203945..182314061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    181560598..181673660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)