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galnt1.S polypeptide N-acetylgalactosaminyltransferase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398911, updated on 4-Nov-2024

Summary

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Official Symbol
galnt1.S
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 1 S homeolog
Primary source
Xenbase:XB-GENE-1013403
Locus tag
XELAEV_18003857mg
See related
EnsemblRapid:ENSXLAG00005002028 AllianceGenome:Xenbase:XB-GENE-1013403
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
galnt1; Galntl-1; galnt1.L; galnac-t1
Summary
Predicted to enable carbohydrate binding activity and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to act upstream of or within protein O-linked glycosylation. Predicted to be located in Golgi cisterna membrane; Golgi membrane; and extracellular region. Orthologous to human GALNT1 (polypeptide N-acetylgalactosaminyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See galnt1.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (55325037..55564546, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694850.1 (791952..1032849)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121395067 Neighboring gene uncharacterized LOC121395100 Neighboring gene uncharacterized LOC108704918 Neighboring gene INO80 complex subunit C S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68664

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1 S homeolog
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
polypeptide N-acetylgalactosaminyltransferase 1 L homeolog
NP_001083410.1
XP_041423035.1
XP_041423036.1
XP_041423037.1
XP_041423038.1
XP_041423039.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089941.1 → NP_001083410.1  polypeptide N-acetylgalactosaminyltransferase 1 S homeolog

    See identical proteins and their annotated locations for NP_001083410.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060419
    UniProtKB/TrEMBL
    Q6PA81
    Related
    ENSXLAP00005006106.1, ENSXLAT00005006212.1
    Conserved Domains (2) summary
    cd02510
    Location:119 → 419
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:432 → 548
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    55325037..55564546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041567102.1 → XP_041423036.1  polypeptide N-acetylgalactosaminyltransferase 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1L0F6
    Conserved Domains (2) summary
    cd02510
    Location:59 → 359
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:372 → 490
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_041567103.1 → XP_041423037.1  polypeptide N-acetylgalactosaminyltransferase 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1L0F6
    Conserved Domains (2) summary
    cd02510
    Location:59 → 359
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:372 → 490
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  3. XM_041567101.1 → XP_041423035.1  polypeptide N-acetylgalactosaminyltransferase 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1L381
    Related
    ENSXLAP00005006096.1, ENSXLAT00005006202.1
    Conserved Domains (2) summary
    cd02510
    Location:113 → 413
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:426 → 544
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  4. XM_041567104.1 → XP_041423038.1  polypeptide N-acetylgalactosaminyltransferase 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1L0F6
    Conserved Domains (2) summary
    cd02510
    Location:59 → 359
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:372 → 490
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  5. XM_041567105.1 → XP_041423039.1  polypeptide N-acetylgalactosaminyltransferase 1 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1L208
    Conserved Domains (2) summary
    cd02510
    Location:15 → 315
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:328 → 446
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein Strain
Heading Accession and Version

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