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hoxa7.L homeobox A7 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398549, updated on 4-Nov-2024

Summary

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Official Symbol
hoxa7.L
Official Full Name
homeobox A7 L homeolog
Primary source
Xenbase:XB-GENE-865003
Locus tag
XELAEV_18030993mg
See related
EnsemblRapid:ENSXLAG00005012554 AllianceGenome:Xenbase:XB-GENE-865003
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
antp; hox36; hoxa7; Hox-A7; XlHbox5
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in ectoderm; mesoderm; and nervous system. Orthologous to human HOXA7 (homeobox A7). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See hoxa7.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (43435062..43437713, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (39638830..39641481, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene homeobox A3 L homeolog Neighboring gene uncharacterized LOC121394578 Neighboring gene homeobox A5 L homeolog Neighboring gene homeobox A6 L homeolog Neighboring gene homeobox A9 L homeolog Neighboring gene homeobox protein Hox-A10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Posterior expression of a homeobox gene in early Xenopus embryos. Condie BG, et al. Development, 1987 Sep. PMID 2452727
  2. Xenopus homeobox-containing cDNAs expressed in early development. Fritz A, et al. Nucleic Acids Res, 1988 Feb 25. PMID 2894634, Free PMC Article
  3. derrière: a TGF-beta family member required for posterior development in Xenopus. Sun BI, et al. Development, 1999 Apr. PMID 10068640
  4. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
homeobox protein Hox-A7
Names
xhox-36
xlHbox-3
xlhbox 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089069.1 → NP_001082538.1  homeobox protein Hox-A7

    See identical proteins and their annotated locations for NP_001082538.1

    Status: PROVISIONAL

    Source sequence(s)
    M24752
    UniProtKB/Swiss-Prot
    P09071
    UniProtKB/TrEMBL
    A0A974CLR8, B7ZRU4
    Related
    ENSXLAP00005036815.1, ENSXLAT00005037724.1
    Conserved Domains (1) summary
    pfam00046
    Location:126 → 178
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    43435062..43437713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P09071.1 GenPept UniProtKB/Swiss-Prot:P09071

Gene LinkOut

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