U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OTC ornithine transcarbamylase [ Sus scrofa (pig) ]

Gene ID: 397438, updated on 17-Aug-2024

Summary

Official Symbol
OTCprovided by VGNC
Official Full Name
ornithine transcarbamylaseprovided by VGNC
Primary source
VGNC:VGNC:109476
See related
Ensembl:ENSSSCG00000012236
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in liver (RPKM 129.2) and mixtures (RPKM 48.0) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See OTC in Genome Data Viewer
Location:
chromosome: X
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (34322398..34391711)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (38182326..38251612)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene synaptotagmin like 5 Neighboring gene H2A.L variant histone 3 Neighboring gene sushi repeat containing protein X-linked Neighboring gene retinitis pigmentosa GTPase regulator Neighboring gene thymosin beta-4-like Neighboring gene uncharacterized LOC100511908 Neighboring gene tetraspanin 7 Neighboring gene microRNA mir-9786-1

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables amino acid binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables ornithine carbamoyltransferase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in arginine biosynthetic process via ornithine IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in citrulline biosynthetic process IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
ornithine transcarbamylase, mitochondrial
Names
OTCase
ornithine carbamoyltransferase, mitochondrial
NP_001157474.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164002.2NP_001157474.1  ornithine transcarbamylase, mitochondrial

    Status: PROVISIONAL

    Source sequence(s)
    AY609986
    UniProtKB/TrEMBL
    A0A480E1W6, A0A4X1U355, A0A8D0IBW7
    Related
    ENSSSCP00000072423.1, ENSSSCT00000091202.2
    Conserved Domains (3) summary
    PRK00779
    Location:36342
    PRK00779; ornithine carbamoyltransferase; Provisional
    pfam00185
    Location:188341
    OTCace; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
    pfam02729
    Location:41181
    OTCace_N; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    34322398..34391711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)