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HTT huntingtin [ Sus scrofa (pig) ]

Gene ID: 397014, updated on 17-Aug-2024

Summary

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Official Symbol
HTTprovided by VGNC
Official Full Name
huntingtinprovided by VGNC
Primary source
VGNC:VGNC:89006
See related
Ensembl:ENSSSCG00000008697
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
HDH
Expression
Ubiquitous expression in ovary (RPKM 10.3), spleen (RPKM 9.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See HTT in Genome Data Viewer
Location:
chromosome: 8
Exon count:
69
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (1809768..1934002)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (1461795..1586182)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene NOP14 nucleolar protein Neighboring gene G protein-coupled receptor kinase 4 Neighboring gene 39S ribosomal protein L39, mitochondrial-like Neighboring gene Myb/SANT DNA binding domain containing 1 Neighboring gene regulator of G protein signaling 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Identification and characterization of the miniature pig Huntington's disease gene homolog: evidence for conservation and polymorphism in the CAG triplet repeat. Matsuyama N, et al. Genomics, 2000 Oct 1. PMID 11013077
  2. Fine mapping a quantitative trait locus affecting ovulation rate in swine on chromosome 8. Campbell EM, et al. J Anim Sci, 2003 Jul. PMID 12854806

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in microtubule-based transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
huntingtin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213964.1 → NP_999129.1  huntingtin

    See identical proteins and their annotated locations for NP_999129.1

    Status: PROVISIONAL

    Source sequence(s)
    AB016793
    UniProtKB/TrEMBL
    A0A8D0XNM3, Q9GM99
    Related
    ENSSSCP00000009271.3, ENSSSCT00000009515.3
    Conserved Domains (2) summary
    pfam12372
    Location:1526 → 1552
    DUF3652; Huntingtin protein region
    sd00044
    Location:123 → 145
    HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    1809768..1934002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021100445.1 → XP_020956104.1  huntingtin isoform X2

    UniProtKB/TrEMBL
    F1S8N5
    Conserved Domains (2) summary
    sd00044
    Location:122 → 144
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1458 → 1496
    DUF3652; Huntingtin protein region

  2. XM_013978501.2 → XP_013833955.2  huntingtin isoform X1

    UniProtKB/TrEMBL
    A0A8D1KT38
    Conserved Domains (2) summary
    sd00044
    Location:122 → 144
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1497 → 1535
    DUF3652; Huntingtin protein region

  3. XM_021100446.1 → XP_020956105.1  huntingtin isoform X3

    UniProtKB/TrEMBL
    A0A286ZRA0
    Conserved Domains (2) summary
    sd00044
    Location:59 → 81
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1450 → 1488
    DUF3652; Huntingtin protein region

  4. XM_021100447.1 → XP_020956106.1  huntingtin isoform X4

    UniProtKB/TrEMBL
    A0A286ZRA0
    Conserved Domains (2) summary
    sd00044
    Location:3 → 25
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1394 → 1432
    DUF3652; Huntingtin protein region
Nucleotide Protein
Heading Accession and Version

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