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PECAM1 platelet and endothelial cell adhesion molecule 1 [ Sus scrofa (pig) ]

Gene ID: 396941, updated on 17-Aug-2024

Summary

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Official Symbol
PECAM1provided by VGNC
Official Full Name
platelet and endothelial cell adhesion molecule 1provided by VGNC
Primary source
VGNC:VGNC:91304
See related
Ensembl:ENSSSCG00000017277
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CD31; PECAM-1
Expression
Ubiquitous expression in lung (RPKM 162.6), subcutaneous adipose (RPKM 159.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PECAM1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (14667643..14723296)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (14661621..14717153)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene DNA polymerase gamma 2, accessory subunit Neighboring gene mast cell immunoglobulin like receptor 1 Neighboring gene uncharacterized LOC110255989 Neighboring gene uncharacterized LOC106505408 Neighboring gene testis expressed 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion via plasma-membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
platelet endothelial cell adhesion molecule
Names
platelet/endothelial cell adhesion molecule (CD31 antigen)
type I transmembrane endothelial adhesion molecule

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213907.1 → NP_999072.1  platelet endothelial cell adhesion molecule precursor

    See identical proteins and their annotated locations for NP_999072.1

    Status: PROVISIONAL

    Source sequence(s)
    X98505
    UniProtKB/Swiss-Prot
    Q95242
    UniProtKB/TrEMBL
    A0A287ALH4, A0A8D0VG73, A0A8D1JIQ9, A0A8D1RSN0, K7GS31
    Related
    ENSSSCP00000030711.4, ENSSSCT00000035177.4
    Conserved Domains (4) summary
    smart00410
    Location:43 → 127
    IG_like; Immunoglobulin like
    pfam13895
    Location:328 → 405
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:511 → 577
    Ig_3; Immunoglobulin domain
    cl11960
    Location:43 → 127
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    14667643..14723296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013980836.2 → XP_013836290.2  platelet endothelial cell adhesion molecule isoform X1

    UniProtKB/TrEMBL
    A0A8D0US49, A0A8D1L670
    Related
    ENSSSCP00000029360.2, ENSSSCT00000033315.3
    Conserved Domains (2) summary
    smart00410
    Location:43 → 127
    IG_like; Immunoglobulin like
    pfam13895
    Location:327 → 405
    Ig_2; Immunoglobulin domain

  2. XM_005668680.3 → XP_005668737.2  platelet endothelial cell adhesion molecule isoform X2

    UniProtKB/TrEMBL
    A0A2C9F3C8, A0A8D1RS80, A0A8D1XMF2
    Related
    ENSSSCP00000018307.3, ENSSSCT00000018809.6
    Conserved Domains (2) summary
    smart00410
    Location:43 → 127
    IG_like; Immunoglobulin like
    pfam13895
    Location:327 → 405
    Ig_2; Immunoglobulin domain

  3. XM_013980837.2 → XP_013836291.2  platelet endothelial cell adhesion molecule isoform X3

    UniProtKB/TrEMBL
    A0A4X1SXD3
    Conserved Domains (2) summary
    smart00410
    Location:43 → 127
    IG_like; Immunoglobulin like
    pfam13895
    Location:327 → 405
    Ig_2; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q95242.1 GenPept UniProtKB/Swiss-Prot:Q95242

Gene LinkOut

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