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CNN1 calponin 1 [ Sus scrofa (pig) ]

Gene ID: 396911, updated on 17-Aug-2024

Summary

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Official Symbol
CNN1provided by VGNC
Official Full Name
calponin 1provided by VGNC
Primary source
VGNC:VGNC:86825
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
Calponin-1
Expression
Broad expression in spleen (RPKM 72.4), heart (RPKM 51.8) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CNN1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (70183370..70190756)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (70536430..70544016)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene zinc finger protein 653 Neighboring gene ECSIT signaling integrator Neighboring gene elongation factor 1 Neighboring gene acid phosphatase 5, tartrate resistant

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Mammalian calponin. Identification and expression of genetic variants. Strasser P, et al. FEBS Lett, 1993 Sep 6. PMID 8370452
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calponin-1
Names
basic calponin
calponin H1, smooth muscle
h1-calponin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213878.1 → NP_999043.1  calponin-1

    See identical proteins and their annotated locations for NP_999043.1

    Status: PROVISIONAL

    Source sequence(s)
    Z19538
    UniProtKB/Swiss-Prot
    Q08092
    UniProtKB/TrEMBL
    A0A8D0Q9H5
    Conserved Domains (3) summary
    COG5199
    Location:18 → 188
    SCP1; Calponin [Cytoskeleton]
    pfam00307
    Location:29 → 127
    CH; Calponin homology (CH) domain
    pfam00402
    Location:164 → 187
    Calponin; Calponin family repeat

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    70183370..70190756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013987363.2 → XP_013842817.1  calponin-1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VKD2, A0A8D0Q9H5
    Conserved Domains (2) summary
    pfam00402
    Location:114 → 138
    Calponin; Calponin family repeat
    cl00030
    Location:1 → 84
    CH_SF; calponin homology (CH) domain superfamily

  2. XM_021080565.1 → XP_020936224.1  calponin-1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VKD2, A0A8D0Q9H5
    Conserved Domains (2) summary
    pfam00402
    Location:114 → 138
    Calponin; Calponin family repeat
    cl00030
    Location:1 → 84
    CH_SF; calponin homology (CH) domain superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q08092.1 GenPept UniProtKB/Swiss-Prot:Q08092

Gene LinkOut

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