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PLN phospholamban [ Gallus gallus (chicken) ]

Gene ID: 396378, updated on 17-Aug-2024

Summary

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Official Symbol
PLNprovided by CGNC
Official Full Name
phospholambanprovided by CGNC
Primary source
CGNC:11054
See related
Ensembl:ENSGALG00010015134
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
PLB
Orthologs
human mouse all
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Genomic context

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See PLN in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (62579083..62593039, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (62473328..62487279, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene histone chaperone ASF1-like Neighboring gene minichromosome maintenance 9 homologous recombination repair factor Neighboring gene anti-silencing function 1A histone chaperone Neighboring gene centrosomal protein 85 like Neighboring gene microRNA 199b Neighboring gene uncharacterized LOC121110348

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of cDNA and genomic sequences encoding a chicken phospholamban. Toyofuku T, et al. J Biol Chem, 1991 Mar 25. PMID 1825996
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of ATPase-coupled calcium transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of calcium ion import into sarcoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of heart rate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cardiac phospholamban

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205410.3 → NP_990741.2  cardiac phospholamban

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/Swiss-Prot
    P26677
    UniProtKB/TrEMBL
    R4GK80
    Related
    ENSGALP00010021222.1, ENSGALT00010036462.1
    Conserved Domains (1) summary
    cd20250
    Location:1 → 52
    Phospholamban; Phospholamban bioactive peptide and similar proteins

RNA

  1. NR_171268.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063

  2. NR_171269.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    62579083..62593039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    62473328..62487279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P26677.1 GenPept UniProtKB/Swiss-Prot:P26677

Gene LinkOut

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