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HOXD8 homeobox D8 [ Gallus gallus (chicken) ]

Gene ID: 396301, updated on 17-Aug-2024

Summary

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Symbol
HOXD8provided by CGNC
Full Name
homeobox D8provided by CGNC
Primary source
CGNC:49743
See related
Ensembl:ENSGALG00010024753
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See HOXD8 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (15913570..15915499, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (15831281..15833209, complement)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene homeobox D3 Neighboring gene uncharacterized LOC107053815 Neighboring gene homeobox D4 Neighboring gene microRNA 10b Neighboring gene uncharacterized LOC121111234 Neighboring gene immediate-early protein IE180-like Neighboring gene homeobox D9 Neighboring gene homeobox D10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. cDNA cloning of a homeobox-containing gene expressed in avian myeloblastic virus-transformed chicken monoblastic leukaemia cells. Crompton MR, et al. Leukemia, 1991 May. PMID 1674560
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-D8
Names
CHOX M product
chox-M
homeo box D8
homeobox protein Hox-M

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207177.2 → NP_997060.1  homeobox protein Hox-D8

    See identical proteins and their annotated locations for NP_997060.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000236
    UniProtKB/Swiss-Prot
    P23459
    UniProtKB/TrEMBL
    A0A8V1A1X4
    Related
    ENSGALP00010037180.1, ENSGALT00010060421.1
    Conserved Domains (1) summary
    pfam00046
    Location:99 → 152
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    15913570..15915499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015289389.4 → XP_015144875.1  homeobox protein Hox-D8 isoform X2

    Conserved Domains (2) summary
    COG5576
    Location:121 → 235
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:178 → 230
    Homeobox; Homeobox domain

  2. XM_015289388.4 → XP_015144874.1  homeobox protein Hox-D8 isoform X1

    Conserved Domains (2) summary
    COG5576
    Location:121 → 236
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:179 → 231
    Homeobox; Homeobox domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    15831281..15833209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046921148.1 → XP_046777104.1  homeobox protein Hox-D8 isoform X2

  2. XM_046921147.1 → XP_046777103.1  homeobox protein Hox-D8 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P23459.1 GenPept UniProtKB/Swiss-Prot:P23459

Gene LinkOut

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Molecular Biology Databases
Research Materials