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HOXA9 homeobox A9 [ Gallus gallus (chicken) ]

Gene ID: 396096, updated on 17-Aug-2024

Summary

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Symbol
HOXA9provided by CGNC
Full Name
homeobox A9provided by CGNC
Primary source
CGNC:13931
See related
Ensembl:ENSGALG00010001840
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
HOXA-9
Orthologs
human all
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Genomic context

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See HOXA9 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (32546047..32564089, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (32598635..32616675, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene homeobox A3 Neighboring gene uncharacterized LOC121109556 Neighboring gene homeobox A6 Neighboring gene homeobox A7 Neighboring gene HOXA10 antisense RNA Neighboring gene microRNA 1732 Neighboring gene microRNA 196b Neighboring gene homeobox A10 Neighboring gene uncharacterized LOC107052544 Neighboring gene homeobox A11 Neighboring gene homeobox A13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Temporal colinearity in expression of anterior Hox genes in developing chick embryos. Gaunt SJ, et al. Dev Dyn, 1996 Nov. PMID 8922526
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proximal/distal pattern formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-A9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001305224.2 → NP_001292153.1  homeobox protein Hox-A9

    See identical proteins and their annotated locations for NP_001292153.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000037
    UniProtKB/TrEMBL
    F1NE14, F1NJG5
    Conserved Domains (2) summary
    pfam00046
    Location:197 → 251
    Homeobox; Homeobox domain
    pfam04617
    Location:1 → 181
    Hox9_act; Hox9 activation region

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    32546047..32564089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046919010.1 → XP_046774966.1  homeobox protein Hox-A9 isoform X1

    UniProtKB/TrEMBL
    F1NE14, F1NJG5
    Related
    ENSGALP00010002487.1, ENSGALT00010004190.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    32598635..32616675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046910425.1 → XP_046766381.1  homeobox protein Hox-A9 isoform X1

    UniProtKB/TrEMBL
    F1NE14, F1NJG5
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q98924.1 GenPept UniProtKB/Swiss-Prot:Q98924

Gene LinkOut

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Molecular Biology Databases
Research Materials