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TBP TATA-box binding protein [ Gallus gallus (chicken) ]

Gene ID: 395995, updated on 10-Oct-2024

Summary

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Symbol
TBPprovided by CGNC
Full Name
TATA-box binding proteinprovided by CGNC
Primary source
CGNC:8484
See related
Ensembl:ENSGALG00010007866
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
TBP1
Orthologs
human mouse all
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Genomic context

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See TBP in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (40386566..40397804, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (40284404..40295638, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene C1orf131 homolog Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene programmed cell death 2 Neighboring gene proteasome subunit beta 1 Neighboring gene family with sequence similarity 120B Neighboring gene uncharacterized LOC121110373

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two forms of avian(chicken) TATA-binding protein mRNA generated by alternative polyadenylation. Yamauchi J, et al. Biochem Biophys Res Commun, 1997 May 19. PMID 9177284
  2. Conserved alternative and antisense transcripts at the programmed cell death 2 locus. Mihola O, et al. BMC Genomics, 2007 Jan 18. PMID 17233890, Free PMC Article
  3. Genetic variation among chicken lines and mammalian species in specific genes. Zhou H, et al. Poult Sci, 2001 Mar. PMID 11261557
  4. Comparative analysis of the PDCD2-TBP-PSMB1 region in vertebrates. Trachtulec Z, et al. Gene, 2004 Jun 23. PMID 15194198
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA-box-binding protein
Names
TA-TA binding protein 1
TATA sequence-binding protein
TATA-binding factor
TATA-binding protein
TATA-box factor
transcription initiation factor TFIID TBP subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396190.1 → NP_001383119.1  TATA-box-binding protein

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
    Conserved Domains (1) summary
    PLN00062
    Location:125 → 301
    PLN00062; TATA-box-binding protein; Provisional

  2. NM_001396191.1 → NP_001383120.1  TATA-box-binding protein

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
    Related
    ENSGALP00010010278.1, ENSGALT00010018728.1
    Conserved Domains (1) summary
    PLN00062
    Location:125 → 301
    PLN00062; TATA-box-binding protein; Provisional

  3. NM_001396192.1 → NP_001383121.1  TATA-box-binding protein

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
    Conserved Domains (1) summary
    PLN00062
    Location:125 → 301
    PLN00062; TATA-box-binding protein; Provisional

  4. NM_001396193.1 → NP_001383122.1  TATA-box-binding protein

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
    Conserved Domains (1) summary
    PLN00062
    Location:125 → 301
    PLN00062; TATA-box-binding protein; Provisional

  5. NM_001396194.1 → NP_001383123.1  TATA-box-binding protein

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
    Conserved Domains (1) summary
    PLN00062
    Location:125 → 301
    PLN00062; TATA-box-binding protein; Provisional

  6. NM_205103.2 → NP_990434.2  TATA-box-binding protein

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
    Conserved Domains (1) summary
    PLN00062
    Location:125 → 301
    PLN00062; TATA-box-binding protein; Provisional

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    40386566..40397804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025148547.3 → XP_025004315.1  TATA-box-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
    Conserved Domains (1) summary
    PLN00062
    Location:125 → 301
    PLN00062; TATA-box-binding protein; Provisional

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    40284404..40295638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046913188.1 → XP_046769144.1  TATA-box-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A1L1RPU7, F7BGR1, Q6JLB1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O13270.1 GenPept UniProtKB/Swiss-Prot:O13270

Gene LinkOut

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